| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1086 |
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| Symbol | hsdM |
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| ID | 1182721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1191539 |
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| End bp | 1193269 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392464 |
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| Product | type I restriction-modification system, M subunit |
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| Protein accession | NP_790920 |
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| Protein GI | 28868301 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
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| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGATC AGAAGGGCGA ACAGGCCATC AACAGCCTCG CCGAGCAGGC ACTCAATGAA
GCCCGGGCGC GTTTTTCTCC AAACGAAAGC GGTGCCGAGC CAGAATTCGA GCCACTGAAG
AAAAAGCCCG GGCGCAAAGC GGCTGTGACT GCCACCAGCA GTACCCTGCA AGACCTGGAA
AAGACCCTGT GGGCCACCGC CGATAAGATG CGGGCCAACA TGGATCCCGC AGAGTACAAG
CACATCGTGC TTGGTCTGAT CTTCCTCAAG TACATCTCCG ACAGCTTTGC TGGCCGCCGC
GCGGAACTGG AACGCAAATT TTCCGATGCT GGCGACGATT ATTACTTGGG CGGTGACGAT
CCGACGTATC TGGCCTCAGA GCTCGAAGAG CGTGACTATT ACAAAGAAGT GAATGTGTTC
TGGGTACCGG AGCCGGCGCG ATGGGAGTCG CTACGTGCAG CCGCTAAACA GGTTGACATC
GGCAAGCGTA TTGATGACGC CCTGGCCGAT ATCGAAGCGG AAAACCCCCA GCTAAAGAAC
ATTCTCGACA AGCGTTATGC CCGCGCCCAG TTGCCGGATG GCAAGCTTGG CGAACTGGTC
GATATGATTT CCATCATTGG GTTTAGCAGC GACGCAAACA AAGCTCGTGA CCTGCTGGGC
CAAGTCTATG AATACTTCCT CGGCCAGTTC GCCAGTGCCG AAGGCAAGCG TGGCGGACAG
TTCTACACCC CGGCGAGCAT CGTCAAGACC CTGGTGGCTG TGCTCAACCC GCACCATGGC
AAGGTCTACG ACCCCTGCTG CGGCTCCGGC GGCATGTTTG TCCAGTCAGA AAAATTCATC
GAAGCCCACG GCGGCAAGCT GGGAGATGTT TCCATCTACG GTCAGGAATC CAACCCGACC
ACCTGGCGCT TGGCGGCGAT GAACCTGGCC ATTCGTGGCA TGGATTTCAA CCTGGGCAAG
GAACCGGCCG ACAGCTTTAT CCGCAATCAG CACAGCGATC TGCGGGCCGA CTTCGTCTTG
GCCAATCCAC CGTTCAACAT CAGCGACTGG TGGCACGGCA GCCTCGACGG CGATTCACGT
TGGGTCTATG GCACGCCGCC ACAAGGCAAT GCCAACTACG CCTGGCTGCA GCACATGCTG
TTTCACCTCA AATCCAGCGG TCGCGCTGGC ATCGTCCTGG CGAACGGCTC GATGAGCTCC
AGCCAGAACA GCGAAGGTGA CATCCGCCGC GCCATGGTCG AGGCCGACGT GGTCGAAGTG
ATGGTCGCCC TGCCCGGCCA ACTGTTTTTC AACACGCAAA TCCCGGCCTG CCTGTGGTTT
TTGGCCAAGC AAAAAAACAA ACGTCCTGGC GAAGTGCTGT TTATCGACGC GCGCAAGCTC
GGCACCAACA TTAGTCGGGT GCAGATCGAA CTGCTGGATA GCGACATCGA AAGCATCGCG
CAGACCGTTG CTAACTGGCG CGGGGTGCCA CTGGAGGTCG ACGGCGAGAT CGCCGAATAC
GCTGACGTTG CCGGTTTCTG CCGCAGTGTG CCTCTGGCGG AAATCGCCGA GCATGGTCAT
GTGCTGACCC CAGGGCGTTA TGTCGGGGCC GAGGCCGTCG AGGATGACGA CGAAGCCTTT
GCCGACAAAA TGCAGGACCT TACTGCGCTC TTGGGTGAAC AGCTGGCCAA GGGCACTGAG
CTCGATCAGT TGATCCGCCA CAAGCTGGGG GGGCTGGGTT ATGAGTTCTG A
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| Protein sequence | MTDQKGEQAI NSLAEQALNE ARARFSPNES GAEPEFEPLK KKPGRKAAVT ATSSTLQDLE
KTLWATADKM RANMDPAEYK HIVLGLIFLK YISDSFAGRR AELERKFSDA GDDYYLGGDD
PTYLASELEE RDYYKEVNVF WVPEPARWES LRAAAKQVDI GKRIDDALAD IEAENPQLKN
ILDKRYARAQ LPDGKLGELV DMISIIGFSS DANKARDLLG QVYEYFLGQF ASAEGKRGGQ
FYTPASIVKT LVAVLNPHHG KVYDPCCGSG GMFVQSEKFI EAHGGKLGDV SIYGQESNPT
TWRLAAMNLA IRGMDFNLGK EPADSFIRNQ HSDLRADFVL ANPPFNISDW WHGSLDGDSR
WVYGTPPQGN ANYAWLQHML FHLKSSGRAG IVLANGSMSS SQNSEGDIRR AMVEADVVEV
MVALPGQLFF NTQIPACLWF LAKQKNKRPG EVLFIDARKL GTNISRVQIE LLDSDIESIA
QTVANWRGVP LEVDGEIAEY ADVAGFCRSV PLAEIAEHGH VLTPGRYVGA EAVEDDDEAF
ADKMQDLTAL LGEQLAKGTE LDQLIRHKLG GLGYEF
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