| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1080 |
|---|
| Symbol | rfbD |
|---|
| ID | 1182715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1184565 |
|---|
| End bp | 1185470 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637392458 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | NP_790914 |
|---|
| Protein GI | 28868295 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.945649 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TTCTGCTGGG AAAAAACGGC CAGGTCGGCT GGGAGCTGCA ACGCTCGCTC
GCGGTATTGG GCGAAGTCGT AGCGCTCGAT CGTCATACCG CCTCGACGGT CTACGGCGAC
CTTTCTGGCG ACCTGTCCAG TCTGGACGGG TTGCGCAATA CGATTCGCTG CGTTAAACCT
CAGGTTATCG TCAACGCCGC GGCCTATACC GCCGTCGACA AAGCAGAGAC CGAGCAAGAG
CTTGCACACA CGGTCAACGC TCTGGCCAGC CAGGTTCTGG CAGAAGAAGC GCGTCAGCTC
GATGCCCTGC TCGTTCATTA CTCGACCGAC TACGTGTTCG ACGGCACCGG AACCAGCGCA
TGGAAAGAAA GCGATGCGGT GTCGCCGGTC AACTACTACG GTGCAACCAA GCTTGAGGGT
GAACAGCTCA TTGTGGCGTC AGGCTGCAAA CATCTGATTT TCCGCACCAG CTGGGTGTAT
GCGGCACGCG GTAACAACTT TGCCAAGACC ATGCTGCGCC TTGCAAAAGA TCGTCCTGCG
CTGAATGTGA TCGCCGATCA GATTGGCGCG CCTACAGGTG CAGAGCTGCT GGCCGATATA
GCGACAGCGG CGCTGCAGCA GACGCTTGCA AGGCCAGAGC TGTGCGGTAT CTACCACCTC
GCACCTGCCG GCGAAGTGTC ATGGCATGCT TATGCGCAAT ACGTCATTGA TTTCGCCCGC
GCCCACGGGG AACCCTTGGC GGTGGAAACG ATCAATCCAA TCGGCACGAT TGAATACCCG
ACACCCGCGC AACGCCCTCT GAATTCGCGT CTGAACACAG AAAAGCTGCG CCACAATTTT
TCTCTGCACC TGCCTGACTG GCAAAGTGGT GTAGCCCGAA TGCTCATGGA AGCTCTGAAT
AAATGA
|
|---|
| Protein sequence | MKILLLGKNG QVGWELQRSL AVLGEVVALD RHTASTVYGD LSGDLSSLDG LRNTIRCVKP
QVIVNAAAYT AVDKAETEQE LAHTVNALAS QVLAEEARQL DALLVHYSTD YVFDGTGTSA
WKESDAVSPV NYYGATKLEG EQLIVASGCK HLIFRTSWVY AARGNNFAKT MLRLAKDRPA
LNVIADQIGA PTGAELLADI ATAALQQTLA RPELCGIYHL APAGEVSWHA YAQYVIDFAR
AHGEPLAVET INPIGTIEYP TPAQRPLNSR LNTEKLRHNF SLHLPDWQSG VARMLMEALN
K
|
|---|
| |