Gene PSPTO_1056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1056 
Symbol 
ID1182690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1152922 
End bp1153686 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content58% 
IMG OID637392435 
Productoxidoreductase, short chain dehydrogenase/reductase family 
Protein accessionNP_790892 
Protein GI28868273 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGAT TCACCCAGAA AGTCGTTGTT GTCACCGGAG CCGGTTCTGG AATCGGCGAA 
GCGACCGCCA AGCGTTTCGC ACATGAAGGC GCGAGCGTCG TGCTGGTCGG TCGCAATCAG
GAGAAGCTTG CCAAAGTAGC CGCGCAACTG AAAGGTGCAG AGCATCTGAT CAGGGCTACC
GATGTGGCGG ATCTGACGGA TGTAGAGGCG CTGTTCAAGG AAGTGGCTGA ACGCTTCGGT
CGCTTGGATG TACTGGTCAA CAACGCAGGT GTCGTCAAGT CGGGCAAGGT GACGGAGCTG
GGCGTGGAAG ACTGGAAAGC AGTGATGTCA GTGGATCTGG ATGGTGTTTT TTATTGCACC
CGTACCGCCA TGCCTGCGTT GATCGCCAGC AAAGGCAACA TCATCAACGT ATCGTCGGTG
TCCGGCCTGG GCGGCGACTG GGGCATGAGC TTCTACAATG CTGCCAAAGG CGCGATTACC
AATTTCACCC GCGCGCTGGC CCTGGACCAT GGCGCAGATG GCGTACGAAT CAATGCCGTT
TGCCCATCAC TGACTCGCAG CGAACTGACT GAAGACATGC TGGGTGATGA AGCATTAATG
GCAAAGTTCA TGGAACGCAT CCCGCTGGGG CGTCCGGGCG AAGCTGAAGA TGTCGGCGAT
GTCATCGCTT TTCTGGCCAG TGAAGACGCG CGCTTCGTGA CTGGCGTCAA CCTCCCGGTG
GATGGCGGAT TGTCAGCGTC CAACGGCCAG CCGCCGCAGG CTTGA
 
Protein sequence
MNRFTQKVVV VTGAGSGIGE ATAKRFAHEG ASVVLVGRNQ EKLAKVAAQL KGAEHLIRAT 
DVADLTDVEA LFKEVAERFG RLDVLVNNAG VVKSGKVTEL GVEDWKAVMS VDLDGVFYCT
RTAMPALIAS KGNIINVSSV SGLGGDWGMS FYNAAKGAIT NFTRALALDH GADGVRINAV
CPSLTRSELT EDMLGDEALM AKFMERIPLG RPGEAEDVGD VIAFLASEDA RFVTGVNLPV
DGGLSASNGQ PPQA