Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1056 |
Symbol | |
ID | 1182690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1152922 |
End bp | 1153686 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637392435 |
Product | oxidoreductase, short chain dehydrogenase/reductase family |
Protein accession | NP_790892 |
Protein GI | 28868273 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATCGAT TCACCCAGAA AGTCGTTGTT GTCACCGGAG CCGGTTCTGG AATCGGCGAA GCGACCGCCA AGCGTTTCGC ACATGAAGGC GCGAGCGTCG TGCTGGTCGG TCGCAATCAG GAGAAGCTTG CCAAAGTAGC CGCGCAACTG AAAGGTGCAG AGCATCTGAT CAGGGCTACC GATGTGGCGG ATCTGACGGA TGTAGAGGCG CTGTTCAAGG AAGTGGCTGA ACGCTTCGGT CGCTTGGATG TACTGGTCAA CAACGCAGGT GTCGTCAAGT CGGGCAAGGT GACGGAGCTG GGCGTGGAAG ACTGGAAAGC AGTGATGTCA GTGGATCTGG ATGGTGTTTT TTATTGCACC CGTACCGCCA TGCCTGCGTT GATCGCCAGC AAAGGCAACA TCATCAACGT ATCGTCGGTG TCCGGCCTGG GCGGCGACTG GGGCATGAGC TTCTACAATG CTGCCAAAGG CGCGATTACC AATTTCACCC GCGCGCTGGC CCTGGACCAT GGCGCAGATG GCGTACGAAT CAATGCCGTT TGCCCATCAC TGACTCGCAG CGAACTGACT GAAGACATGC TGGGTGATGA AGCATTAATG GCAAAGTTCA TGGAACGCAT CCCGCTGGGG CGTCCGGGCG AAGCTGAAGA TGTCGGCGAT GTCATCGCTT TTCTGGCCAG TGAAGACGCG CGCTTCGTGA CTGGCGTCAA CCTCCCGGTG GATGGCGGAT TGTCAGCGTC CAACGGCCAG CCGCCGCAGG CTTGA
|
Protein sequence | MNRFTQKVVV VTGAGSGIGE ATAKRFAHEG ASVVLVGRNQ EKLAKVAAQL KGAEHLIRAT DVADLTDVEA LFKEVAERFG RLDVLVNNAG VVKSGKVTEL GVEDWKAVMS VDLDGVFYCT RTAMPALIAS KGNIINVSSV SGLGGDWGMS FYNAAKGAIT NFTRALALDH GADGVRINAV CPSLTRSELT EDMLGDEALM AKFMERIPLG RPGEAEDVGD VIAFLASEDA RFVTGVNLPV DGGLSASNGQ PPQA
|
| |