| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1054 |
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| Symbol | |
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| ID | 1182688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1151189 |
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| End bp | 1152457 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392433 |
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| Product | outer membrane porin, OprD family |
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| Protein accession | NP_790890 |
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| Protein GI | 28868271 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCTC ACACTTCCCG CTCGCGCATC CTGCTGGGTG TTGGCGGCAT GACGCTGATT
TTCCCGATGC TGAGCATGGC CGAAGGTTTC GTGGACGACA CCAAAGCCAC GCTGACCCTG
CGTAATGCGT ACTTCAATCG TAACTTCACC AACCCCGCGT TTCCCAACAG CGCAGCGCCG
CAGAACAAAG CCGAAGAATG GACACAAAAC TTCATCCTCG ATGCCAAGTC GGGCTTTACC
CAGGGCGTGG TCGGTTTCGG GGTTGATGTG CTGGGCCTGT ATTCGCTCAA GCTTGATGGC
GGCAAAGGCA CGGGAGGCAC TCAGTTGCTG CCGATCCACA GTGACGGCCG CCCGGCGGAT
GATTTCGGGC GTCTGGGTGT GGCGGGCAAG GCTCGGGTTT CCAAGACCGA ACTGAAAGTG
GGCGAATGGA TGCCGGTGCT GCCAATCCTG CGTTCCGATG ACGGCCGCTC GTTGCCGCAA
ACCTTTCAGG GCGGACAGGT GACGTCCAGG GAAATCGACG GGCTGACGTT GTATGGCGGC
CAGTTCCGGG GCAACAGCCC GCGTAACGAC GCCAGTATGG AAGACATGTC GATGAACGGA
CGAGGCGCGT TTACTTCTGA TCGCTTCAAC TTCGGCGGCG GTGAGTACGT CTTCAACGAC
AAGCGCACTC AGGTCGGTGT CTGGTACTCG GAACTGCAGG ACATCTACCA GCAGCAGTAC
TTCAACCTGT TGCACAGCCA GCCCATCGGC GACTGGACCC TGGGGGCCAA CCTGGGTTTC
TTCACCGGCA AGGAAGACGG CAACAAGCTC GCGGGCGATC TGGACAACAA GACCACCTAC
GCGCTGCTTT CAGCCCGCTA CGGCGGCAGC ACATTTTATG TCGGCCTGCA GAAACTCACC
GGCGATACGG CGTGGATGCG CGTCAACGGC ACCAGCGGCG GCACGCTGGC CAACGACAGT
TACAACTCCA GCTACGATAA CGCCAAAGAG AAATCCTGGC AGTTGCGCCA CGACTACAAC
TTCGCAGTGC TCGGTGTACC CGGCCTGACC ATGATGAACC GCTATATCAG CGGCGATAAT
GTGCACACCG GCACCATCAC TGACGGCAAG GAATGGGGGC GCGAGTCGGA ACTGGCGTAC
ACCGTACAAA GCGGCGCACT GAAGAACCTC AACGTCAAAT GGCGCAACGC AAGTATCCGC
CGCGACTTCA GTGTCAATGA ATTCGACGAA AACCGGGTGT TCATCAGCTA CCCGATTTCG
CTGCTCTGA
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| Protein sequence | MTSHTSRSRI LLGVGGMTLI FPMLSMAEGF VDDTKATLTL RNAYFNRNFT NPAFPNSAAP
QNKAEEWTQN FILDAKSGFT QGVVGFGVDV LGLYSLKLDG GKGTGGTQLL PIHSDGRPAD
DFGRLGVAGK ARVSKTELKV GEWMPVLPIL RSDDGRSLPQ TFQGGQVTSR EIDGLTLYGG
QFRGNSPRND ASMEDMSMNG RGAFTSDRFN FGGGEYVFND KRTQVGVWYS ELQDIYQQQY
FNLLHSQPIG DWTLGANLGF FTGKEDGNKL AGDLDNKTTY ALLSARYGGS TFYVGLQKLT
GDTAWMRVNG TSGGTLANDS YNSSYDNAKE KSWQLRHDYN FAVLGVPGLT MMNRYISGDN
VHTGTITDGK EWGRESELAY TVQSGALKNL NVKWRNASIR RDFSVNEFDE NRVFISYPIS
LL
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