| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1049 |
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| Symbol | dctM |
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| ID | 1182683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1146288 |
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| End bp | 1147568 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392428 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | NP_790885 |
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| Protein GI | 28868266 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.29892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCTT TTATACTGTT GGGCAGCTTC ATCGCACTGA TACTTCTCGG CATGCCGGTT
GCCTACGCGC TGGGCCTGTC AGCCCTGATC GGTGCCTGGT GGATCGACAT TCCGGCCGAC
GCCTTGATGA TCCAGATCGC AGGCGGGGTG AACAAGTTCT CGCTGCTGGC GATCCCGTTC
TTCGTGCTGG CCGGGGCAAT CATGGCCGAA GGCGGGATGT CACGACGGCT GGTCGCGTTC
GCCGCAGTAC TGGTGGGCTT TGTGCGCGGC GGCCTGTCGC TGGTCAACAT CGTGGCATCG
ACCTTCTTCG GCGCTATCTC GGGTTCTTCC GTGGCCGATA CCGCATCGGT AGGCTCGGTG
CTGATACCGG AAATGGAACG CAACGGCTAC CCTCGGGACT TCTCGACCGC CGTGACCGTC
AGCGGCTCGG TTCAGGCTCT GCTTACGCCT CCCAGCCACA ACTCGGTGCT TTATTCACTG
GCCGCTGGCG GCACGGTATC GATTGCCTCG CTGTTCATGG CCGGGATCAT GCCAGGGCTG
TTGCTCAGCG CGGTGATGAT TGGCCTGTGC ATGATTTTCG CGCGCCGACG CAATTACCCC
AAGGGTGAAG TGATTCCGCT GCGCAAAGCG CTGAAAATTG CCGGTGAAGC GCTCTGGGGC
ATGATGGCCA TGGTCATCAT TCTCGGTGGC ATTCTGTCGG GGATCTTCAC CGCCACCGAG
TCGGCTGCCA TTGCCGTGCT CTGGGCGTTC TTCGTCACCA TGTTCATTTA CCGCGACTAC
AAATGGCGCG ATCTGCCCAA GCTGATGCAC CGGGCTGCGC GGACCATCTC CATCGTGATG
ATCCTGATCG GTTTTGCCGC CAGCTTCGGT TACATCCTGA CGCTGATGGA AATCCCGATG
AAGATCACCA CGGCGTTCCT GACCCTGTCA GACAACCGCT ACGTGATCCT GATGTGCATC
AACGTCATGT TGCTGCTGTT GGGCACTGTC ATGGACATGG CCCCGCTGAT CCTGATCCTC
ACGCCGATTC TGTTGCCGGT CATCGTCGGC GTCGGCGTGG ACCCGGTGCA CTTCGGCATG
ATCATGCTGG TCAATCTGGG GATCGGGCTG ATCACACCGC CGGTGGGCGC AGTGCTGTTC
GTCGGCGCGG CGGTGGGCAA AGTCACCATC GAAGCCACCG TGAAAGCCTT GCTGCCGTTC
TACGTCGCGC TGTTTCTGGT GCTGATGCTG GTCACCTACG TTCCTGCCAT CTCGCTGTGG
CTGCCGAGCG TCGTGCTCTA A
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| Protein sequence | MDAFILLGSF IALILLGMPV AYALGLSALI GAWWIDIPAD ALMIQIAGGV NKFSLLAIPF
FVLAGAIMAE GGMSRRLVAF AAVLVGFVRG GLSLVNIVAS TFFGAISGSS VADTASVGSV
LIPEMERNGY PRDFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGIMPGL
LLSAVMIGLC MIFARRRNYP KGEVIPLRKA LKIAGEALWG MMAMVIILGG ILSGIFTATE
SAAIAVLWAF FVTMFIYRDY KWRDLPKLMH RAARTISIVM ILIGFAASFG YILTLMEIPM
KITTAFLTLS DNRYVILMCI NVMLLLLGTV MDMAPLILIL TPILLPVIVG VGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGAAVGKVTI EATVKALLPF YVALFLVLML VTYVPAISLW
LPSVVL
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