| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1043 |
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| Symbol | |
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| ID | 1182677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1142032 |
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| End bp | 1142640 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637392422 |
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| Product | RNA polymerase sigma factor sigW, putative |
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| Protein accession | NP_790879 |
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| Protein GI | 28868260 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.488371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGCATTA CTGCCAGTCT CAGGACCTTC TGTCACTTGT CCACCCCTCA CAGCGACTCG
ACAACAAGCC GACTTTGGAT TGATGAAGTC ACCGCCGTGG CCCGCCAGAG GGACCGCGAT
AGCTTCATGC GCATCTACGA TCACTTCGCC CCGCGTTTAT TGCGTTACCT GACGGGGTTG
AATGTGCCCG AGGGGCAGGC GGAAGAATTG GTGCAGGAGG TGCTGCTCAA GCTGTGGCAC
AAGGCGGAAT CCTTCGACCC GAGCAAGGCC AGCCTGGGCA CCTGGCTGTT TCGTATCGCG
CGCAATCTGT ACATCGACAG CGTGCGCAAG GACCGCGGCT GGGTGCAGGT GCAAAATTCA
CTGGAACAAC TTGAGCGTCT GGAGGCCCCT GTAGACAGAA CGCTCGATTA CAGCCAGCGC
CAGGAGCAAC AACTTAATAG TGCCATTCAG AACCTTCCCA CTGATCAGGC CAAAGTGTTG
CGAATGTCTT ACTTCGAAGC GCTCAGCCAT CGGGAAATTT CTGAACGTCT TGATATGCCA
CTGGGCACGG TGAAGTCGTG CCTGCGCCTG GCCTTTCAAA AATTGCGCTC GCGGATCGAG
GAGTCATGA
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| Protein sequence | MRITASLRTF CHLSTPHSDS TTSRLWIDEV TAVARQRDRD SFMRIYDHFA PRLLRYLTGL
NVPEGQAEEL VQEVLLKLWH KAESFDPSKA SLGTWLFRIA RNLYIDSVRK DRGWVQVQNS
LEQLERLEAP VDRTLDYSQR QEQQLNSAIQ NLPTDQAKVL RMSYFEALSH REISERLDMP
LGTVKSCLRL AFQKLRSRIE ES
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