Gene PSPTO_0950 details

Gene Information

• Locus tag: PSPTO_0950
• Symbol: ampD
• ID: 1182579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1029038
• End bp: 1029586
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637392327
• Product: N-acetyl-anhydromuramyl-L-alanine amidase AmpD
• Protein accession: NP_790789
• Protein GI: 28868170
• COG category: [V] Defense mechanisms
• COG ID: [COG3023] Negative regulator of beta-lactamase expression

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACTGG ACCCCGCGAG CGGTTGGTGC GATGGTGTGC AGCATTGCCC TTCGCCCAAC 
TTCAATGCGC GACCCGCAGG CGAGATATCG CTGCTGGTGA TCCACAACAT CAGCCTGCCG 
CCGGCACAAT TCAAAACCGG CAAAGTACAG GCTTTCTTCC AGAACCAACT GGACACCACC 
GAGCATCCCT ACTTTCTGGG GATTGCCGAT CTGCGCGTTT CAGCGCATTT TCTGATCGAA 
CGTGATGGCG ACGTCATTCA GTTCGTCTCT TGTCTTGATC GCGCATGGCA CGCCGGCGTA 
TCCAGCTTCG ACGAGCGTGA GGGGTGTAAT GACTTCTCCG TCGGCATTGA ACTGGAAGGC 
ACGGACGAAC AGCCGTTCAC CGACGCGCAA TACAACGCAC TGATCGACCT GACGCGTCAG 
TTGCGGCAGG CTTACATAGC AATTACCCCC GAGCGCATCT GTGGCCACAG CGACATAGCG 
CCGGGACGCA AGACTGATCC GGGCCCCTGT TTCGACTGGG GCAGGTTTCA AGCGGCTTTG 
CAGGATTGA 

 

Protein sequence

MQLDPASGWC DGVQHCPSPN FNARPAGEIS LLVIHNISLP PAQFKTGKVQ AFFQNQLDTT 
EHPYFLGIAD LRVSAHFLIE RDGDVIQFVS CLDRAWHAGV SSFDEREGCN DFSVGIELEG 
TDEQPFTDAQ YNALIDLTRQ LRQAYIAITP ERICGHSDIA PGRKTDPGPC FDWGRFQAAL 
QD