| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0892 |
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| Symbol | |
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| ID | 1182521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 969369 |
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| End bp | 972419 |
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| Gene Length | 3051 bp |
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| Protein Length | 1016 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392268 |
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| Product | autotransporter, putative |
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| Protein accession | NP_790731 |
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| Protein GI | 28868112 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCCT TATTTAGAAT ATCCCCCCTT GCCTTTGCGA TTACTCTTGC ACTGCTCCCG
GAGGCCCATG CAGTTGACTA TGTGCTCACT AACGGTCAGG ACACCTTTAG CAGCGACCGC
GTGATCGATG GCGCGATCGA CGTCAATTCA ACTGACGGCA ACACCTCCAC CCTCACGATC
AACAGCGGCG CGACGGTGAC CAGCGAAGGC GGCCGTATCG TGGGTCAAGC CAGCCGCACC
GGCGTCAACA TGGCTCAGGC CAACGTTGTA GTTGAAGGGG CCGGTTCGCG CTGGGTGGTG
CCTCGTACCT CATTCGTGCT CGGTAACACC ATCGTTGTCG GTGGTGTAGG CCAGGGCGAC
CTGACGGTTC GCAACGGGGG CCAGGTGTCG GTACGGGATC TGGATCTGGG TGACGTCAGT
GGCGCCCGTT CTAATGCATT TTCGAACGCG ACGCTGTCGG TGAGCGGCCA GAACTCCCTG
GTCGACGCAG TCAACATCGA GGCCGGTGGA GTGTTTGTCT ATCGCTCGAG CATCACGGCC
AACGAGGGTG CCAGAATCAA CAGCCAGCAG GTCGACATCG ACTCGGTCGT CAGGCTTTCT
GGTGCAGGAA CGCGCTGGGA CAACAGCGGC TCCTTCCGGA ACAGAAACGA CCTGACCCTC
GAAAACGGCG CAGTGCTGAC GAGTAACGAG CTGCGACTGG GTTCGGCCGT TGTCAACCGT
AGCAATCAGG TCAATGTTAC CGGACAGGGC ACCCGCCTCG ACGCGCAAAC GTTGACGCTC
GGCACCAGCA TTGTCCGTAC TTACCTGACG CTGGCCGACG GTGCCGAATT GAGCGCCACC
AACGGTATGC TCATCAGCCT CGTGAACGAC AGCAACACGG CGACGCGCGG TACGCTTGCC
ATCGGCGGCT CGGTCGCGGT GGACCCTGAC CGTACCGATG TCGATTCCAT GACTGCCGGC
GCAGCTCAGG CGGCAGGCCG ACTGAACCCG CAAACCGCCG TCAGCTTTGG CACCGGCAAC
GGTTCCCTGG CGTTCAACCA TACCGACCCC GATCTGCAGT TCGCCAACAC GCTGAACGGA
ACGGGTCGAG TGTATGCGTT CAGCGGAAAC ACTACGCTGA GCGGCGACAC CTCGGGGTTA
GCCGGTAGCG TCGTTGTACG CGGTGGGCGG CTGGTGTTGT CAGGGAACGT CGACCAGGTC
AATCAGCGCG GCAACACGGC CACCACCCAA AGCGTTTCGC GGTTTAACGT AGGCAACGGC
ACCCTGGTGG TCAACGGCAT TGCGGGCCGC ACCGAGTTCG GAACCTACAC CAATAGCGCT
CAGGTACTGG ACGGAGGTAT TCTGGCTGGC GTCGGTCAAG TGGGCACCAC CCAGGTCTCT
GCCGGCGGTA CGCTGTCGCC CGGCGAAAAC GCCATCGGCG CACTGGCCAT ACAAGGCGAC
CTGGACATGG CCGCCGGCTC ACGCTACGCC GCAGACATCG CCGGCGACGG CAGGGCAGAC
AAGATCAACG TGAGCGGCAC AGCGACCCTG CGCGGTACGC AGGTAAACGT GACCGCGCTG
GATCCAGCGC AAAGCTATCA GAGCGGCAGA ACCTACACCC TGCTCTCCGC TCAGGGCGGC
TTGGTCGACG GCGCTGCCGC AGGCACTGCC TATGCCCAGG CGCTGACCAA CTCGGCGTTC
CTGAATGTCG GGCTGCAACG CACCGCCAAT GATCTGAATC TCACCATCGA GCAAAAAAGC
GTAGAGCCGA CTCCTACACC TACACCTACA CCTACGCCAA CTCCAACTCC AACTCCAACT
CCAGAGCCCA CACCGACGCC AACCCCGACT CCAACACCAA CACCAGAGCC TGTACCGACG
CCAACCCCTA CACCCACTCC AGAACCTGCG CCAACGCCTG CTCCCGAACC TGCCCCTGCC
CCGGGCATCT TTCAGACAGT CATGCTGACC CAGAACCAGT TCAATACCGC TGGCGCGCTA
AGCGTACTGG CGCAAAGCGG CGAACCCCTG CGTCTCTACA ACAACCTGCT GGTTCTGGAC
GCTGAAGGGG CTCGTGACGC TGCCGATCAA CTGTCCGGCG ACTACCACAG CAGCACCTCG
ACCGCCCTGA TCGCCAACAG CCAGGTGGTC TCCGGCGTTC TGGGCACTCG TCTGCGCAAT
CTTCTGGATA CGGGCACGCT GCGCATGCCA GCCATGGCAC TCAATCTGAT GCCAAGCGCA
CCGACCACTC AAAACGGCGC CTGGGTGCAG CCATTCGGCA ACTGGACCAA GGTAGACGGC
AATAACGGTG CCGGCGGTCT GCAACAAAGC ACCGGCGGCC TGCTGTTCGG GGCGGACGGC
AGCTTTACCC CTGACTGGCG CGGCGGCGTT TACGCCGGCT ACAGCCGCTC GAAGTTCGAT
GCCGATAACC GCGATGCTGA CGGCCACAGC GACAACTATC ATCTGGGCCT CTACACCGGT
GCTCAGATCG ACGCTCTGCG CCTCAGCGCT GACGTCGGTT ACACCTGGCA CAAGCTGGAG
AGTGAGCGGA ATGTGGCGTT TGCCGGATTC AGTGACCACT TGACCGGCAA GCGCAACGCC
CAGTCGCTGC AGGCCAGTGG CGAAGCGGCC TACCGCATAC CGATTGGCCG CGTGGCCCTG
GAGCCTTTCG CCGGCCTGTC CTACGTGCGC TACGATGCCA AGGACATGCA CGAAAAAGGC
GGACCAGCCG CTCTGGACGT GTCCAGCGAT AAACAGGACA CCTTCTTCTC GACGTTGGGT
CTGCGCGCGT CGTCGAACAT CGATGTGGCC AACATCAACA CTCAGGTTTA CGGCTCGCTG
GGATGGAGAC GCGCCTACGG TGACCTGGAC CCGCGCAACA TCCAGTCCTT CGCCGGCGGC
CCGAACTTCG AAGTACAAGG GGTCGCTCAA GCCCGCAACA CGGCCCTCAC TGAAGTGGGC
GCGAAACTGC GCTTGAATCA GCGCACCGAC CTGGACCTGT CCTACCAAGG GCAGTTCGGT
ACCGACACGC GCTTCCATTC GGTTAACGCG GGGGTGACGG TCCGCTTCTG A
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| Protein sequence | MNPLFRISPL AFAITLALLP EAHAVDYVLT NGQDTFSSDR VIDGAIDVNS TDGNTSTLTI
NSGATVTSEG GRIVGQASRT GVNMAQANVV VEGAGSRWVV PRTSFVLGNT IVVGGVGQGD
LTVRNGGQVS VRDLDLGDVS GARSNAFSNA TLSVSGQNSL VDAVNIEAGG VFVYRSSITA
NEGARINSQQ VDIDSVVRLS GAGTRWDNSG SFRNRNDLTL ENGAVLTSNE LRLGSAVVNR
SNQVNVTGQG TRLDAQTLTL GTSIVRTYLT LADGAELSAT NGMLISLVND SNTATRGTLA
IGGSVAVDPD RTDVDSMTAG AAQAAGRLNP QTAVSFGTGN GSLAFNHTDP DLQFANTLNG
TGRVYAFSGN TTLSGDTSGL AGSVVVRGGR LVLSGNVDQV NQRGNTATTQ SVSRFNVGNG
TLVVNGIAGR TEFGTYTNSA QVLDGGILAG VGQVGTTQVS AGGTLSPGEN AIGALAIQGD
LDMAAGSRYA ADIAGDGRAD KINVSGTATL RGTQVNVTAL DPAQSYQSGR TYTLLSAQGG
LVDGAAAGTA YAQALTNSAF LNVGLQRTAN DLNLTIEQKS VEPTPTPTPT PTPTPTPTPT
PEPTPTPTPT PTPTPEPVPT PTPTPTPEPA PTPAPEPAPA PGIFQTVMLT QNQFNTAGAL
SVLAQSGEPL RLYNNLLVLD AEGARDAADQ LSGDYHSSTS TALIANSQVV SGVLGTRLRN
LLDTGTLRMP AMALNLMPSA PTTQNGAWVQ PFGNWTKVDG NNGAGGLQQS TGGLLFGADG
SFTPDWRGGV YAGYSRSKFD ADNRDADGHS DNYHLGLYTG AQIDALRLSA DVGYTWHKLE
SERNVAFAGF SDHLTGKRNA QSLQASGEAA YRIPIGRVAL EPFAGLSYVR YDAKDMHEKG
GPAALDVSSD KQDTFFSTLG LRASSNIDVA NINTQVYGSL GWRRAYGDLD PRNIQSFAGG
PNFEVQGVAQ ARNTALTEVG AKLRLNQRTD LDLSYQGQFG TDTRFHSVNA GVTVRF
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