Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0809 |
Symbol | ispH |
ID | 1182434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 874305 |
End bp | 875252 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637392189 |
Product | hydroxymethylbutenyl pyrophosphate reductase |
Protein accession | NP_790656 |
Protein GI | 28868037 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATCA AACTCGCCAA CCCCCGCGGC TTTTGTGCCG GAGTGGACCG CGCGATCGAA ATCGTCAATC GTGCTCTGGA AGTGTTTGGT CCGCCGATTT ATGTGCGCCA TGAAGTTGTT CACAACAAAT TTGTCGTCGA AGACCTGCGC TCTCGTGGCG CGATCTTTGT TGAAGAGCTT GAACAGGTGC CGGACGACGT CATCGTCATC TTCAGTGCCC ACGGTGTTTC CCAGGCCGTG CGCACCGAAG CTGCCGGTCG TGGCCTGAAA GTCTTCGATG CCACCTGTCC GCTGGTGACC AAGGTGCACA TCGAAGTCGC CCGCTACAGC CGCGATGGTC GCGAGTGCAT CCTGATCGGC CACGCCGGTC ACCCGGAAGT CGAAGGCACC ATGGGCCAGT ACGACGCCGT CAATGGCGGG GCGATCTATC TGGTCGAAGA TGAAGCGGAC GTTGCCAGCC TTGAGGTGCG TAATCCCGAG TCGCTGGCGT TCGTGACCCA GACCACCTTG TCGATGGACG ACACCAGTCG GGTGATCGAC GCGTTGCGCA AGCGCTTCCC GGCCATCGGC GGGCCACGCA AGGACGACAT CTGCTACGCC ACGCAAAACC GCCAGGACGC GGTCAAGCAA TTGGCCGACG AGTGCGACGT GGTGTTGGTG GTGGGCAGCC CGAACAGCTC CAACTCCAAC CGCCTGCGCG AGCTGGCCGA GCGCATGGCC ACCCCGGCCT ATCTGATTGA TGGCGCCGAA GACATGCAGA AGGGCTGGTT CGATGGCGTC GAGCGTATCG GCATCACCGC TGGCGCATCG GCCCCGGAAG TGCTGGTGCG CGGCGTGATC CAGCAATTGC AGGCCTGGGG CGCAACCGGC GCGGATGAGT TGGCTGGCCG CGAAGAGAAC ATCACGTTCT CCATGCCTAA AGAGCTGCGG GTCAAGTCGC TGCTCTAG
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Protein sequence | MQIKLANPRG FCAGVDRAIE IVNRALEVFG PPIYVRHEVV HNKFVVEDLR SRGAIFVEEL EQVPDDVIVI FSAHGVSQAV RTEAAGRGLK VFDATCPLVT KVHIEVARYS RDGRECILIG HAGHPEVEGT MGQYDAVNGG AIYLVEDEAD VASLEVRNPE SLAFVTQTTL SMDDTSRVID ALRKRFPAIG GPRKDDICYA TQNRQDAVKQ LADECDVVLV VGSPNSSNSN RLRELAERMA TPAYLIDGAE DMQKGWFDGV ERIGITAGAS APEVLVRGVI QQLQAWGATG ADELAGREEN ITFSMPKELR VKSLL
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