Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0804 |
Symbol | |
ID | 1182429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 867789 |
End bp | 869327 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637392184 |
Product | membrane protein, MviN family |
Protein accession | NP_790651 |
Protein GI | 28868032 |
COG category | [R] General function prediction only |
COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) [TIGR01695] integral membrane protein MviN |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0938016 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTAC TCAAATCACT CGCCGCCGTA AGCTCTATCA CCATGGTTTC CCGGGTTTTG GGCTTCGTGC GCGACACCAT CATTGCCCGC ACTTTCGGCG CCGGAATGGC CACGGATGCG TTCTTCATCG CCTTCAAACT GCCCAATCTG CTGCGTCGCA TCTTCGCGGA AGGGGCTTTT TCGCAAGCCT TCGTGCCGAT TCTGGCCGAA TACAAGAGCC AGCAGGGCGA GGAGGCGACC CGCACGTTTG TCGCCTATGT CACCGGGCTG CTGACCCTGG CGCTGGCAGT GGTGACGCTG CTGGGGGTGA TCTTTGCGCC CTGGGTGATC TGGGCCACGG CGCCAGGCTT TGCCGACACG CCGGAAAAAT TCGCCCTGAC CTCGGACCTG CTGCGGGTGA CCTTTCCTTA TATATTGCTG ATTTCCCTGT CCTCGATGGC CGGCGCGATC CTCAATACCT GGAATCGTTT CTCGGTGCCT GCGTTCGTGC CAACCCTGCT CAACGTCAGC ATGATTTTCT TCGCGCTGTT CCTCACCCCG TACTTTGCCC CGCCGGTCAT GGCGCTGGGC TGGGCGGTGC TGGTCGGTGG CTTGCTGCAA TTGCTTTATC AACTGCCGCA CCTGAAAAAA ATCGGCATGC TGGTGCTGCC GCGTCTGAAT TTGCGCGATA CCGGCGTCTG GCGGGTCATG AAGCAGATGC TGCCCGCGAT TCTGGGCGTC TCCGTCAGTC AGATTTCTCT GATCATCAAC ACGATATTCG CCTCGTTCCT CGTCGCCGGT TCCGTGTCGT GGATGTACTA CGCTGACCGA CTGATGGAAC TGCCGTCCGG TGTCCTGGGC GTCGCGCTGG GGACGATTCT GCTGCCGATC CTGTCAAAGA CCTACGCGCA GCGCGACCGT CAGGAATACT CGCGGATTCT CGACTGGGGC CTGCGTCTGT GTTTTGTGCT GGTGCTGCCC TGCACGCTGG CGCTGGGCCT GCTCGCTGAA CCGTTGACCG TTTCGCTGTT TCAATACGGC CAGTTCAATG CGCTGGACGC GGCCATGACC CAGCGTGCGC TGGTCGCCTA TTCGGTCGGT TTGCTGGGTA TCATCCTGAT CAAAGTGCTG GCCCCAGGCT TTTATGCCCA ACAAAATATC CGTACCCCGG TGAAAATCGC GATTTTCACC CTCATAGTGA CTCAGTTGCT CAACCTGGCG TTTATCGTGC CTTTGCAGCA TGCCGGTCTG GCGCTGGCCA TCAGCGTGGG GGCGTGCATC AATGCGGGGC TGCTGTTCTG GCAATTGCGC AGACAGGATC TGTTTCAGCC GCAACCGGGC TGGACGAAAT TTCTGTTCAA GCTGATCGTT GCTGTCGCGG TCATGTCTGC TGTGCTGCTG GGGCTCATGC ATGTCATGCC GGCCTGGGAC GAAGGTCATA TGCTGGAGCG TTTTCTGCGT CTGGGTGCGC TGGTCGCGGC GGGGGTGGTG ACGTATTTCG CCATGCTTCT GATGCTGGGC TTTCGCCTGA GGGATTTCGC CCGCAAGGCC ATTATGTAG
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Protein sequence | MNLLKSLAAV SSITMVSRVL GFVRDTIIAR TFGAGMATDA FFIAFKLPNL LRRIFAEGAF SQAFVPILAE YKSQQGEEAT RTFVAYVTGL LTLALAVVTL LGVIFAPWVI WATAPGFADT PEKFALTSDL LRVTFPYILL ISLSSMAGAI LNTWNRFSVP AFVPTLLNVS MIFFALFLTP YFAPPVMALG WAVLVGGLLQ LLYQLPHLKK IGMLVLPRLN LRDTGVWRVM KQMLPAILGV SVSQISLIIN TIFASFLVAG SVSWMYYADR LMELPSGVLG VALGTILLPI LSKTYAQRDR QEYSRILDWG LRLCFVLVLP CTLALGLLAE PLTVSLFQYG QFNALDAAMT QRALVAYSVG LLGIILIKVL APGFYAQQNI RTPVKIAIFT LIVTQLLNLA FIVPLQHAGL ALAISVGACI NAGLLFWQLR RQDLFQPQPG WTKFLFKLIV AVAVMSAVLL GLMHVMPAWD EGHMLERFLR LGALVAAGVV TYFAMLLMLG FRLRDFARKA IM
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