Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0679 |
Symbol | |
ID | 1182299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 736029 |
End bp | 736715 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392054 |
Product | outer membrane protein OmpW |
Protein accession | NP_790526 |
Protein GI | 28867907 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAGC ATCTGCTACG CGCATCTCTT GCCGCGCTTG CCCTCACAGC CCCGCTCGCG GCGAACGCCT ACGAGAAAGG CGACTTCATC GTTCGCGCCG GTGCCGCCCA CGTCCAGCCC AACGAAGACA GCGGTGAAGT CCGCCTGGAC GGTGCCAAGG TTTCCGGCAC CAAATCGACG CTGGATGGCG ATACTCAGCT GGGCCTGACC TTCGCTTACA TGCTCACCAA CCATATCGGC ATCGAGCTGC TGGCTGCCAC GCCGTTCAAC CACACCGTAT CCGTCAAGGG CCTGGGCCCC GGGCTTGACG GCAAGCTGGC CGATGTCAAA CATCTGCCGC CAACCCTGTC GCTGCAATAC TACCCGATGG AGCCTTCGTC CAGATTCCAG CCGTATGCGG GCGTGGGCAT CAACTACACC ACCTTCTTCG ACAATGACCT GACCAGCGAT CGCAAGAGTC AAGGTTTCAG CAACCTCAAA CTCAAGGACT CGGTCGGCCT GGCCGCCCAG TTGGGCATGG ACTACATGAT CACCGACAAC GTACTGGTCA ACGCCTCGGT CTGGTACGTG GATATCAACA CCGAAGCGAC AGTGGACGGC CCTTCTGCTT TGGCAGTCGG CCAGACCAAG GTCGATGTTG ACATCGACCC GTGGGTGTAC ATGGTCGGTG TGGGTTACAA GTTCTGA
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Protein sequence | MNKHLLRASL AALALTAPLA ANAYEKGDFI VRAGAAHVQP NEDSGEVRLD GAKVSGTKST LDGDTQLGLT FAYMLTNHIG IELLAATPFN HTVSVKGLGP GLDGKLADVK HLPPTLSLQY YPMEPSSRFQ PYAGVGINYT TFFDNDLTSD RKSQGFSNLK LKDSVGLAAQ LGMDYMITDN VLVNASVWYV DINTEATVDG PSALAVGQTK VDVDIDPWVY MVGVGYKF
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