Gene PSPTO_0627 details

Gene Information

• Locus tag: PSPTO_0627
• Symbol: rplD
• ID: 1182247
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 692532
• End bp: 693134
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637392002
• Product: ribosomal protein L4
• Protein accession: NP_790474
• Protein GI: 28867855
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0000698865
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAATTAA ATGTAAATGA CGCTCAGGCA ATCGAAGTTT CCGAACTGAC ATTTGGCGGC 
GAATTCAACG AGACGCTGGT TCACCAGGCA GTCGTGGCCT ACATGGCTGG CGGTCGTCAG 
GGTAGCAAGC AGCAAAAGAC CCGTTCCGAC GTTCGTGGTG GCGGTAAGCG CCCTTGGCGT 
CAGAAAGGTA CTGGCCGTGC TCGTGCCGGT ACTATCCGTA GCCCAATCTG GCGCGGCGGC 
GGTACCACTT TCGCAGCTCG TCCTCAGGAT CACACTCAGA AGCTCAACAA GAAGATGTAT 
CGCGCAGCTT TGCGCTCCAT CCTTGCTGAA CTGGTTCGTA CTGATCGTCT GGTCGTGGTT 
CAGGATTTCG CTGTTGAAGC ACCGAAAACC AAAGATTTGC TGAACAAGCT GACTGGCATG 
GGCCTGACTG ACGTCTTGAT CGTGTCTGAC GCTGTTGACC AGAATCTGTA CCTGGCTGCT 
CGTAACCTGC CGCACGTCGA TGTACGTGAT GTTCAAGGTT CCGATCCAGT TAGTCTGATC 
GCATACGACA AGGTGTTGAT CACCGTGTCG GCCGTGAAGA AATTCGAGGA GCTGCTGGGA 
TGA 

 

Protein sequence

MQLNVNDAQA IEVSELTFGG EFNETLVHQA VVAYMAGGRQ GSKQQKTRSD VRGGGKRPWR 
QKGTGRARAG TIRSPIWRGG GTTFAARPQD HTQKLNKKMY RAALRSILAE LVRTDRLVVV 
QDFAVEAPKT KDLLNKLTGM GLTDVLIVSD AVDQNLYLAA RNLPHVDVRD VQGSDPVSLI 
AYDKVLITVS AVKKFEELLG