Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0601 |
Symbol | |
ID | 1182212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 658212 |
End bp | 658988 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391967 |
Product | oxidoreductase, short chain dehydrogenase/reductase family |
Protein accession | NP_790448 |
Protein GI | 28867829 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGTT ACGCCCTGAT CACCGGCGCT TCCAGCGGCA TAGGTCTGGC CATGGCCGAG GCGCTGGCAC GTCGCGGTCA CAGCTTGATC CTCGTTGCCC GCCAGCGCGA TCTGCTGGAA ACAATTGCCC TGGAGCTGAC GCAGCGTTTC GGCGTAGAAG TGCTGTTTCG CGCATGCGAC CTCGGTGAGC CGCTTCGTCT TTCGGGCTTC CTGCTGGAAC TGGAAGACGG CGCGCATCAG ATTGACCTGC TGGTGAATGC GGCGGGCATC GGCACCTGCG GACCGTTTCT GGCGCAGGAC TGGAGTGCCG AACAGGACTT GATCGACCTG AACATCCTCG CGCTCACACG GCTTTGCCAT ACGGTCGGTA ACCTGATGGC TATTCAGGGT GGCGGGCAGA TTCTCAATAT CGCTTCGGTG GCTGCGTTTC AGCCCGGGCC GTGGATGAGC ACTTACTACG CCAGCAAGGC GTACGTGCTG CACTTTTCCG AAGGGCTGCG CGAGGAAGTG AAGAAAGCCG GGGTCAAGGT GTCGGTATTG TGTCCCGGCC CGACCAAAAG CGCTTTTTTC CGCACCGCAC AGTTGCAAGT GAACGTCGAC AACCTGATGA GTGCCGAAGA AGTGGCGCTG TACACCGTTC GTGCACTCGA AAAAAACCGC GCGGTGATCG TTCCAGGCTT CAGTAACAGG CTGTGGACCT TAAGCCCGCG TCTGGTTTCA CGCTGGCTGG CTCGCCAGAT CAGCGGCTAC ATCAACAAGA AGTACTGCCC GCGCTGA
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Protein sequence | MTRYALITGA SSGIGLAMAE ALARRGHSLI LVARQRDLLE TIALELTQRF GVEVLFRACD LGEPLRLSGF LLELEDGAHQ IDLLVNAAGI GTCGPFLAQD WSAEQDLIDL NILALTRLCH TVGNLMAIQG GGQILNIASV AAFQPGPWMS TYYASKAYVL HFSEGLREEV KKAGVKVSVL CPGPTKSAFF RTAQLQVNVD NLMSAEEVAL YTVRALEKNR AVIVPGFSNR LWTLSPRLVS RWLARQISGY INKKYCPR
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