Gene PSPTO_0560 details

Gene Information

• Locus tag: PSPTO_0560
• ID: 1182170
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 616355
• End bp: 616984
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637391927
• Product: DNA-binding response regulator, LuxR family
• Protein accession: NP_790407
• Protein GI: 28867788
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATTCGTG TTTTGGTAGC CGAAGACCAC ACCATCGTGC GTGAAGGGAT CAAGCAGTTG 
ATTGGTCTGG CCAGAGACCT GCAAGTGGTC GGTGAGGCCA GCAACGGCGA GCAGTTGCTC 
GAGACCCTGC GCCATGTGGC CTGCGAAGTG GTGTTGCTGG ATATTTCCAT GCCCGGCGTG 
AATGGCCTTG AGGCGATTCC GCGGATTCGC GCACTGACCC ATCCGCCTGC GATTCTTGTG 
TTGTCGATGC ACAACGAGGC GCAGATGGCT GCACGCGCCT TGAAGGTCGG CGCGGCGGGC 
TATGCGACAA AAGATAGCGA CCCGGCATTG CTGCTGACGG CGATTCGTCG GGTTGCGGCG 
GGCGGGCGTT ACATCGACCC GGACCTGGCC GACCGCATGG TCTTTGAAGT AGGTCTCACC 
GATAGCCGGC CGTTGCACTC ATTGCTGTCT GAGCGCGAGT TCTCGGTGTT CGAGCGCCTG 
GCGCAGGGCG CCAACGTCAA TGACATTGCC CAGCAACTGG CCCTGAGCAG CAAGACCATC 
AGCACCCACA AAGCGCGGCT GATGCAGAAA ATGAAACTCA ACTCACTGGC CGATCTCGTC 
AAATACGCGA TGGAGCACAA ACTGCTCTGA 

 

Protein sequence

MIRVLVAEDH TIVREGIKQL IGLARDLQVV GEASNGEQLL ETLRHVACEV VLLDISMPGV 
NGLEAIPRIR ALTHPPAILV LSMHNEAQMA ARALKVGAAG YATKDSDPAL LLTAIRRVAA 
GGRYIDPDLA DRMVFEVGLT DSRPLHSLLS EREFSVFERL AQGANVNDIA QQLALSSKTI 
STHKARLMQK MKLNSLADLV KYAMEHKLL