Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0480 |
Symbol | glcB-1 |
ID | 1182089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 525681 |
End bp | 527858 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391848 |
Product | malate synthase G |
Protein accession | NP_790329 |
Protein GI | 28867710 |
COG category | [C] Energy production and conversion |
COG ID | [COG2225] Malate synthase |
TIGRFAM ID | [TIGR01345] malate synthase G |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0169498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAGT ACGTTCAAGT CGGTGACCTG CAAGTCGCCA GAGTCCTGTT CGACTTCGTG CAGAACGAAG CAACCCCCGG AACCGGCGTC GATGCGGGCG CATTCTGGGC CGGTGCGGAC CAACTGATCC ACGACCTCGC GCCAAAGAAC AAGGCACTGC TCGCCCAGCG TGATGAATTG CAGGCGCAGA TCGATGCCTG GCACCAGTCG CGTGCTGGCC AGGCGCACGA CGCCTCGGCT TACAAAGCCT TCCTTCAGGA GATCGGCTAT CTGCTGCCAG AAGCGGCGGA CTTTCAGATC ACCACGCAAA ACGTCGACGA AGAAATTGCC ACCATGGCTG GCCCGCAACT GGTCGTGCCG GTGATGAACG CACGCTTCGC GCTCAACGCA TCGAATGCAC GCTGGGGCTC GTTGTACGAT GCGCTCTACG GCACCGATGC AATCAGCGAA GAAGGCGGCG CGGAAAAAGG CAAGGGCTAC AACAAGGTGC GTGGCGACAA AGTCATCGCC TTCGCCCGCG CCTTTCTTGA TCAGGCTGCG CCGCTGGCGG CAGGCTCGCA CGTTGACTCG ACTGCTTACA AATTGATCGA CGGCAGACTG GTCATCAGCC TCAAGGGCGG CAGCAACACC GGCCTGCGCG ACGATGCACA ACTGGTCGGT TTTCAAGGCG ATGCCTCGGC ACCGTTCGCC GTGCTGTTCA AGCACAACGG TCTGCATTTC GAATTGCAGA TCGACGCTGC AAGCCCGGTC GGCCAGACCG ATCCGGCAGG CGTGAAAGAC ATCGTCATGG AAGCCGCGCT GACGACCATC ATGGACTGCG AAGACTCCAT CGCGGCCGTC GATGCCGACG ACAAAGTGGT CGTTTACCGC AACTGGCTGG GCCTGATGAA AGGTGATCTG GTTGAATCGG TGTCCAAGGG CGGCGAAACC TTCACCCGCA CCATGAACCC GGACCGGGTC TACACCACGC CACAAGGTGG CGAAGTCACG CTGCACGGTC GTTCGTTGCT GTTCATCCGC AACGTCGGCC ACCTGATGAC CATCGACGCG ATTCTCGACA AGCATGGCAA CGAAGTGCCA GAAGGCATTC TCGATGGCCT GCTGACCAGT CTCGCTGCGA TCCACAACCT CAACGGCAAT AACACACGCA GCAACAGCCG CAGCGGCTCG ATGTACATCG TCAAACCGAA GATGCACGGG CCGCAGGAAG CCGCGTTCAC CAACGAGCTG TTCGGGCGTA TCGAGCAGGT ACTGGGCTTG CCGCGCAACA CGCTGAAAGT CGGCATCATG GACGAGGAGC GCCGTACCAC GGTCAACCTC AAGGCCTGCA TTCAGGCCGC AAGCGAGCGC GTGGTGTTCA TCAACACCGG CTTTCTGGAC CGCACCGGTG ACGAAATCCA CACGTCGATG GAAGCAGGCC CGGTGGTGCG CAAGGCGCAG ATGAAAGCCG AAAAATGGAT CTCGGCCTAC GAGAACTCCA ACGTCGATAT CGGCCTGAAA TGCGGCCTGC AAGGTCGTGC GCAGATCGGC AAGGGTATGT GGGCCATGCC CGATCTGATG GCCGCCATGC TGGAGCAGAA AATCGCCCAC CCGCTGGCAG GCGCAAACAC CGCCTGGGTG CCATCACCCA CCGCGGCTGC GCTGCATGCT CTGCACTATC ACAAGGTGGA TGTGTTCGCT CGTCAGGCCG AACTGGCCCA GCGCGAACAG GCCTCGGTGG ATGACATCCT GACCATACCG CTCGCGCTGA ACACCGACTG GACACCGGAA CAAGTCCAGA ACGAACTGGA CAACAACGCC CAGGGCATTC TTGGCTATGT GGTGCGCTGG ATTGATCAGG GCGTGGGTTG CTCGAAAGTC CCGGATATCA ACGACATCGG CCTGATGGAA GACCGCGCCA CGCTGCGCAT CTCCAGCCAG CACATGACCA ACTGGCTGCG GCATGGCATC GTCACCGAAA CGCAGGTACT GGAAAGCCTC AAACGCATGG CCCCTGTCGT GGACCGCCAG AACGCCAACG ACCCGCTGTA CCGCCCACTT TCACCAGACT TCGACAGCAA CATCGCCTTC CAGGCGGCCG TCGAACTGGT CATAGAAGGC ACGCGACAGC CCAACGGCTA CACCGAGCCG GTGCTGCATC GCCGCCGTCG CGAGTTCAAG GCGAAAAACC GGGTGTAA
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Protein sequence | MTEYVQVGDL QVARVLFDFV QNEATPGTGV DAGAFWAGAD QLIHDLAPKN KALLAQRDEL QAQIDAWHQS RAGQAHDASA YKAFLQEIGY LLPEAADFQI TTQNVDEEIA TMAGPQLVVP VMNARFALNA SNARWGSLYD ALYGTDAISE EGGAEKGKGY NKVRGDKVIA FARAFLDQAA PLAAGSHVDS TAYKLIDGRL VISLKGGSNT GLRDDAQLVG FQGDASAPFA VLFKHNGLHF ELQIDAASPV GQTDPAGVKD IVMEAALTTI MDCEDSIAAV DADDKVVVYR NWLGLMKGDL VESVSKGGET FTRTMNPDRV YTTPQGGEVT LHGRSLLFIR NVGHLMTIDA ILDKHGNEVP EGILDGLLTS LAAIHNLNGN NTRSNSRSGS MYIVKPKMHG PQEAAFTNEL FGRIEQVLGL PRNTLKVGIM DEERRTTVNL KACIQAASER VVFINTGFLD RTGDEIHTSM EAGPVVRKAQ MKAEKWISAY ENSNVDIGLK CGLQGRAQIG KGMWAMPDLM AAMLEQKIAH PLAGANTAWV PSPTAAALHA LHYHKVDVFA RQAELAQREQ ASVDDILTIP LALNTDWTPE QVQNELDNNA QGILGYVVRW IDQGVGCSKV PDINDIGLME DRATLRISSQ HMTNWLRHGI VTETQVLESL KRMAPVVDRQ NANDPLYRPL SPDFDSNIAF QAAVELVIEG TRQPNGYTEP VLHRRRREFK AKNRV
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