Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0464 |
Symbol | |
ID | 1182073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 509006 |
End bp | 509953 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637391832 |
Product | glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein |
Protein accession | NP_790313 |
Protein GI | 28867694 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGGTT CCAAATCGTT GCTGTTGGCC GCCACGCTCT GTATGCCGGT GCTTGCTCAG GCAGCCGAGC CAGAGGCCTG TCATACGGTC AACTTCTCCG ACGTAGGCTG GACTGACATC ACCGTCACCA CAGCGGTGAC CAGCGCCGTA CTCGAGTCAC TGGGTTACAA GACCAAGACC ACCATGATTT CCGTACCGGT GACCTACAAG TCGCTGGCAG ATGGCAAGAA CATGGACGTT TTCCTCGGCA ACTGGATGCC GACCATGGAA AACGACATCA AGCCTTATCG CGAAGCCGGC ACTGTCGAAA CCGTGCGCGC CAACCTCGAA AACGCCAAAT ACACCCTGGC CGTGCCGCAA GCGCTCTACG ACAAAGGCCT GCATGACTTC GCCGACATCA CCAAATTCAA GAAAGAACTG GGCGGCAAGA TCTACGGTAT CGAACCCGGC AACGACGGCA ACCGCCTGAT CCAGAGCATG ATCGACAAGA ACGCCTTCGG CCTCAAAGAT GCGGGCTTCA AGGTGGTGGA ATCCAGCGAG GCGGCCATGC TCTCGCAGGT TGATCGCGCC GTGAAACGCA AAAACGATGT GGTGTTCCTG GGCTGGGAAC CGCACCCGAT GAACACACGC TTCAAGATGA AATATCTTAC CGGCGGCGAT GACTTTTTCG GCCCCAACTA TGGCCAGGCG ACTATCTACA CCAACACCCG CAAAGGCTAC AGTCAGGAAT GCAGCAACGT AGGCCAGTTG CTCAAGAACC TGTCCTTCAC GCTGGAAATG GAAAGCACCC TGATGGGCAA TGTGCTGGAT GACAAGACCA AGCCTGATGC CGCCGCCAAG GCGTGGATCA AGAAAAACCC GCAAGTGCTC GACACCTGGC TGGCAGGCGT GACCACCGTG GATGGCAAAC CAGGCCTGGA GGCAGCCAAG GCCAAGTTGA CCCAGTAA
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Protein sequence | MKGSKSLLLA ATLCMPVLAQ AAEPEACHTV NFSDVGWTDI TVTTAVTSAV LESLGYKTKT TMISVPVTYK SLADGKNMDV FLGNWMPTME NDIKPYREAG TVETVRANLE NAKYTLAVPQ ALYDKGLHDF ADITKFKKEL GGKIYGIEPG NDGNRLIQSM IDKNAFGLKD AGFKVVESSE AAMLSQVDRA VKRKNDVVFL GWEPHPMNTR FKMKYLTGGD DFFGPNYGQA TIYTNTRKGY SQECSNVGQL LKNLSFTLEM ESTLMGNVLD DKTKPDAAAK AWIKKNPQVL DTWLAGVTTV DGKPGLEAAK AKLTQ
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