Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0461 |
Symbol | glyA-1 |
ID | 1182070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 505408 |
End bp | 506661 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391829 |
Product | serine hydroxymethyltransferase |
Protein accession | NP_790310 |
Protein GI | 28867691 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGCA AGCAAGACCA GATTCAGGGT TATGACGACG CACTGTTGTC GGCAATGAAC GCCGAGGAGC AGCGTCAGGA AGACCATATC GAGCTGATCG CCTCGGAGAA CTACACCAGC AAGCGCGTCA TGCAGGCCCA AGGCAGCGGC CTGACCAACA AATACGCCGA AGGCTATCCC GGCAAGCGCT ACTACGGCGG TTGCGAGCAC GTCGACAAGG TCGAGCAACT GGCCATCGAA CGCGCCAGAC AGCTGTTCGG TGCCGATTAC GCCAACGTCC AGCCACACTC CGGCAGCCAG GCCAACGCGG CGGTCTACCT GGCGCTGCTG CAGGCAGGCG ACACGGTGCT GGGAATGAGC CTTGCGCACG GCGGCCACCT GACCCACGGT GCCAAAGTCA GTTTCTCGGG CAAGCTGTAC AACGCCGTGC AGTACGGCAT CGACACCACC ACCGGCCTGA TCGATTACGA CGAAGTCGAA CGCATCGCCG TCGAATGCCA GCCAAAAATG CTCATTGCCG GTTTCTCGGC CTATTCCAAA ACGCTGGATT TCCCGCGTTT TCGTGCAATC GCCGACAAGG TGGGTGCCTA CCTGTTCGTC GACATGGCCC ACGTTGCAGG TCTGGTGGCT GCCGGTCTTT ATCCAAACCC GCTGCCGTAT GCCGATGTGG TCACCACCAC CACGCACAAG ACACTGCGTG GCCCGCGCGG CGGTCTGATC CTTGCCAAGG CCAACGAAGA GCTGGAGAAG AAATTCAATT CAGCCGTCTT CCCCGGTGGT CAGGGCGGCC CGTTGATGCA CGTCATTGCG GCCAAGGCCG TGTGCTTCAA GGAAGCGATG GAGCCCGGCT TCAAGACGTA TCAGCAGCAG GTCATCGATA ACGCACAAGC GATGGCGCAA GTCTTCATCA CGCGCGGCTT CGACGTGGTT TCCGGCGGCA CCGACAACCA CCTGTTTCTG GTCAGCCTGA TCCGTCAGGG CCTGACCGGC AAAGAAGCCG ACGCCGCGCT AGGCCGTGCG CACATCACCG TCAACAAGAA CTCGGTGCCC AACGACCCGC AGTCGCCATT TGTCACCTCG GGCCTGCGCA TCGGCACCCC GGCCGTCACC ACTCGCGGTT TCAAGGTCAC CCAGTGCATC GAACTGGCAG GCTGGATATG CGACATTCTC GACAACCTCG GCGCCGCCGA TGTCGAGGCC AACGTCGCCA GCCAGGTAGC AGCCCTGTGC GCCGATTTCC CGGTTTATCG CTGA
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Protein sequence | MFSKQDQIQG YDDALLSAMN AEEQRQEDHI ELIASENYTS KRVMQAQGSG LTNKYAEGYP GKRYYGGCEH VDKVEQLAIE RARQLFGADY ANVQPHSGSQ ANAAVYLALL QAGDTVLGMS LAHGGHLTHG AKVSFSGKLY NAVQYGIDTT TGLIDYDEVE RIAVECQPKM LIAGFSAYSK TLDFPRFRAI ADKVGAYLFV DMAHVAGLVA AGLYPNPLPY ADVVTTTTHK TLRGPRGGLI LAKANEELEK KFNSAVFPGG QGGPLMHVIA AKAVCFKEAM EPGFKTYQQQ VIDNAQAMAQ VFITRGFDVV SGGTDNHLFL VSLIRQGLTG KEADAALGRA HITVNKNSVP NDPQSPFVTS GLRIGTPAVT TRGFKVTQCI ELAGWICDIL DNLGAADVEA NVASQVAALC ADFPVYR
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