| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0396 |
|---|
| Symbol | |
|---|
| ID | 1182005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 435100 |
|---|
| End bp | 437160 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391764 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase family protein |
|---|
| Protein accession | NP_790245 |
|---|
| Protein GI | 28867626 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTCG AAGCGATGTT CCAGCCGATC CAGATCGGCA AACTGACAAT CCGCAACCGT
GTGCTCAGCA CCGCGCACGC CGAGGTGTAC GCCACCGACG GCGGCATGAC CACTGACCGT
TACGTGAAGT ATTACGAAGA GAAAGCCAAG GGCGGTATTG GCCTGGCGAT CTGCGGCGGC
TCGTCGAGCG TGGCCATTGA CAGCCCGCAA GGCTGGTGGA AGTCGGTCAA TCTGGCGACC
GACAGAATTA TCCCGCATTT TCAGAACCTC GCCGACGCCA TGCACAAGCA CGGCGCGAAG
ATCATGATCC AGATTACCCA CATGGGCCGA CGCTCGCGCT GGGATGGTGA TCACTGGCCG
ACCCTGATGT CGCCATCGGG CATCCGCGAG CCGGTGCACC GGGCGACCTG CAAGACCATC
GAACCGGAAG AAATCTGGCG CGTGATCGGC AATTACGCCA GCGCAGCGGC TCGCGCCAAG
GCTGGTGGGC TGGACGGCGT CGAATTGTCT GCCGTGCATC AGCACATGAT CGACCAGTTC
TGGAGCCCGC GCGTCAACAA GCGCACCGAT GAATGGGGCG GCAGTTTTGA GAACCGCATG
CGCTTCGGCC TGGAAGTCAT CAAGGCGGTG CGCAAGGAAG TCGGCCCTGA TTTCTGCGTG
GGCCTGCGCA TCTGCGGCGA TGAATTTCAC CCTGATGGCC TGAGCCACGA GGACATGAAA
CAGATCGCCA AGTATTACGA CGACACTGGC CTGATCGATT TCCTCGGCGT GGTGGGCTCG
GGCTGCGACA CCCACAACAC TCTGGCCAAC GTCATCCCGA ACATGAGTTA CCCACCGGAA
CCGTTCCTGC ATCTGGCGGC CGGTATCAAG GAAGTGGTGA AAGCGCCGGT GCTGCACGCG
CAGAACATCA AGGACCCAAA CCAGGCCACG CGCATTCTGG AAGGTGGCTA CGTCGACATG
GTCGGCATGA CCCGCGCGCA CATCGCCGAC CCGCACCTGA TCGCCAAGAT CAAGATGGGT
CAGATCGACC AGATCAAACA ATGCGTGGGC GCCAACTACT GCATCGACCG TCAGTATCAA
GGGCTGGATG TGCTGTGCAT CCAGAACGCC GCTACGTCCC GCGAATACAT GGGCGTGCCG
CATATCATCG AAAAATCCGC CGGGCCGAAA CGCAAGGTCG TGGTGGTCGG GGCTGGCCCT
GCCGGCATGG AAGCTGCGCG GGTTTCTGCC GAGCGCGGCC ATGACGTGAC CCTGTTCGAG
AAAAAGGCGT TTATCGGCGG GCAGATCACC ACCGCATCGA AAGCACCGCA GCGCGACCAG
ATTGCCGGCA TCACGCGCTG GTTCCAGCTT GAGCTGGCGC GCCTGAAAGT CGATCTGCGC
CTTGGCACAG CCGCCGATGC GGCGACCATC CTCGACCTGC GCCCGGACAT CGTGGTGCTG
GCAGTGGGCG GTCATCCGTT TCTGGAACAG AACGAACACT GGGGCGCGGC AGAAGGGCTG
GTGGTCAGCA GTTGGGACGT ACTGGACGGC AAGGTCGCGC CAGGCAAGAA CGTGCTGGTC
TACGACACCA TCTGCGAGTT CACCGGCATG TCGGTGGCTG ACTTCCTGGC CGATAAGGGC
TGCCAGGTCG AGATCGTCAC CGATGACATC AAGCCGGGTG TGGCGATCGG CGGTACGTCG
TTCCCGACCT ACTACCGCAG CATGTACCCC AAGGAAGTGA TCATGACCGG CGACATGATG
CTGGAAAAGG TCTATCGCGA GGGCGACAAG CTGGTCGCGG TGCTGGAAAA CGAATACACC
GGGGCCAAGG AAGAGCGGGT GGTCGATCAG GTGGTGGTGG AAAACGGTGT GCGCCCGGAC
GAAGCGATTT ACTACGCACT CAAGGAAGGC TCGCGCAACA AGGGCCAGAT AGACATCGAC
GCACTGTTCG CCATTGAGCC GCAGCCTTCA TTGAGCCAGC CGGGCGACGG TTATTTGCTG
TTCCGCATCG GCGACTGCGT GGCGCAGCGC AATACCCATG CAGCGATCTA CGACGGCTTG
CGGCTGTGCA AGGATTTCTG A
|
|---|
| Protein sequence | MAFEAMFQPI QIGKLTIRNR VLSTAHAEVY ATDGGMTTDR YVKYYEEKAK GGIGLAICGG
SSSVAIDSPQ GWWKSVNLAT DRIIPHFQNL ADAMHKHGAK IMIQITHMGR RSRWDGDHWP
TLMSPSGIRE PVHRATCKTI EPEEIWRVIG NYASAAARAK AGGLDGVELS AVHQHMIDQF
WSPRVNKRTD EWGGSFENRM RFGLEVIKAV RKEVGPDFCV GLRICGDEFH PDGLSHEDMK
QIAKYYDDTG LIDFLGVVGS GCDTHNTLAN VIPNMSYPPE PFLHLAAGIK EVVKAPVLHA
QNIKDPNQAT RILEGGYVDM VGMTRAHIAD PHLIAKIKMG QIDQIKQCVG ANYCIDRQYQ
GLDVLCIQNA ATSREYMGVP HIIEKSAGPK RKVVVVGAGP AGMEAARVSA ERGHDVTLFE
KKAFIGGQIT TASKAPQRDQ IAGITRWFQL ELARLKVDLR LGTAADAATI LDLRPDIVVL
AVGGHPFLEQ NEHWGAAEGL VVSSWDVLDG KVAPGKNVLV YDTICEFTGM SVADFLADKG
CQVEIVTDDI KPGVAIGGTS FPTYYRSMYP KEVIMTGDMM LEKVYREGDK LVAVLENEYT
GAKEERVVDQ VVVENGVRPD EAIYYALKEG SRNKGQIDID ALFAIEPQPS LSQPGDGYLL
FRIGDCVAQR NTHAAIYDGL RLCKDF
|
|---|
| |