Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0375 |
Symbol | |
ID | 1181984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 412540 |
End bp | 415701 |
Gene Length | 3162 bp |
Protein Length | 1053 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637391743 |
Product | cation efflux family protein |
Protein accession | NP_790224 |
Protein GI | 28867605 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTGAAC GGTTGATTCA ATTCGCGATT GAACAGCGCA TCGTCGTGAT GCTCGCTGTG TTGCTCATGG CTGGGCTGGG CATTGCCAGT TACCAGAAAC TGCCCATCGA TGCCGTCCCC GACATCACCA ACGTTCAGGT GCAGATCAAC ACCTCCGCGC CCGGCTTCTC ACCGCTGGAG ACCGAGCAGC GGGTTACCTT CGCCATCGAA ACCAACATGG CCGGCCTGCC TGGCCTGCAA CAGACCCGCT CGCTGTCGCG CTCGGGCCTG TCCCAGGTCA CGGTGATTTT CGAAGACGGC ACGGACTTGT TCTTTGCTCG CCAGCTGGTG GGCGAGCGCC TGCAGATTGC CAAGGACCAG TTGCCCGAAG GCGTCGATGC CATGATGGGG CCGATTTCCA CCGGCCTCGG CGAGATTTTT CTGTGGACGG TCGAAGCCCG CGACGGCGCG CTGAAAGAAG ACGGCACGCC TTACACGCCG ACGGACCTGC GAGTGATCCA GGACTGGATT ATCAAGCCGC AACTGCGCAA CGTGCCGGGC GTGGCCGAGA TCAACACCAT CGGCGGTTTC GCCAAGCAAT ACCAGATAGC CCCCGACCCG AAAAAACTCG CGGCCTACAA GCTGACCCTA AACGACCTGG TGGCCGCACT GGAGCGCAAC AACGCCAACG TTGGCGCGGG TTACATCGAG CGCGGCGGCG AGCAACTGTT GATCCGCGCA CCGGGCCAGC TCGGCACGGT GGACGACATC GCCAACATCG TCATCGCCAA TGTGCAGGGC ACGCCGATCA GAATCAGCAG CGTGGCCGAG GTCGGCATCG GCAAGGAAAT GCGCTCCGGC GCCGCGACTG AAAACGGTCG GGAAGTGGTG CTCGGCACGG TGTTCATGCT GATCGGTGAA AACAGCCGGA CCGTCTCGCA GGCCGTGGCG GCCAAGCTTG CCGACATCAA CCGCACACTG CCCGAAGGCG TCGAGGCGGT CACGGTGTAT GACCGCACCA ACCTGGTCGA AAAGGCCATC GCGACGGTGA AAAAGAACCT GATCGAAGGC GCGATTCTGG TCATCGTGAT TCTGTTTCTG TTCCTGGGCA ACATCCGCGC CGCACTGATC ACCGCCATGG TCATTCCACT GGCCATGCTC TTCACCTTCA CCGGCATGTT CACCAACAAG GTCAGCGCCA ACCTGATGAG CCTGGGCGCG CTGGACTTCG GCATCATTGT CGATGGCGCG GTGGTGATCG TCGAAAACGC CATCCGCAGG CTGGCACATG CCCAAAAGAA ATACGGCCGC ATGCTGACCC GCAGCGAGCG CTTCCACGAA GTGTTCGCCG CCGCCCGAGA AGCCCGTCGG CCGCTGATAT TCGGCCAGTT GATCATCATG GTCGTGTACC TGCCGATCTT TGCCCTCACC GGCGTGGAAG GCAAAATGTT CCACCCGATG GCCTTCACCG TGGTCATCGC CCTGCTCGGC GCCATGATCC TCTCGGTGAC CTTCGTGCCG GCCGCCATCG CCATGTTCGT CACCGGCAAG GTCAAGGAAG AAGAAGGCTT TGTGATGCGC ACCGCTCGCC AGCGCTATGC GCCGATCCTG AGCTGGGTGC TGAGCCATCG CGCCATCGCC TTCGGCATGG CCTTCGTGCT GATCGTGCTG TCCGGCTTCA CTGCCAGCCG CATGGGCAGC GAGTTCATCC CAAGCCTCAG CGAAGGCGAC TTTGCCTTGC AGGCGCTGCG CGTACCCGGT ACCAGCCTGA GCCAGTCGGT GGACATGCAG CAGCGTCTGG AAAAAGCCAT CATCGAAAAA GTGCCGGAAG TGCAGCGCGT CTTCGCCCGT ACCGGCACCG CCGAGATCGC CGCCGACCCG ATGCCGCCCA ACATTTCCGA CAGCTACGTG ATGCTCAAGC CGCAAAGCGA ATGGCCGGAC CCGGACAAAT CCCGCGAAAC GCTGATCGCC GACCTGCAAA AGGCCGCCGC CAGTGTGCCG GGCAGCAACT ACGAACTGTC CCAGCCGATC CAGTTGCGCT TCAACGAACT GGTTTCCGGG GTGCGCAGTG ACGTGGCGGT GAAAGTGTTC GGCGACGACA TGAACGTGCT CAACCAGACC GCCGCCAAAA TCGCCGCCAC GCTGCAAAAA GTGCCGGGCG CCTCAGAAGT CAAAGTCGAG CAGACCACCG GCCTGCCGGT ACTGACCATC AACATCGACC GCGACAAGGC TGCGCGTTAC GGCCTCAACG TGGCCGACGT GCAGGACGCC ATCGCCATTG CGCTGGGCGG TCGTCAGGCG GGCACCTTGT ATGAAGGTGA TCGGCGTTTC GACATGGTGG TGCGCCTGTC CGAGCAACTG CGTACCGACG TGGACGGGCT TTCCAGCCTG CTCATTCCGG TGCCTGCGAA CGCGAGCAGC CAGCAGATCA GCTTCATCGC CCTGTCCCAG GTCGCCAGCC TTGATCTGGT ATTAGGCCCG AACCAGATCA GCCGCGAGAA CGGCAAGCGC GTGGTGATCG TCAGCGCCAA CGTGCGCGGT CGCGACCTCG GCTCGTTTGT CGAAGAAGCG GGCACCACCA TCGACAGCGG CGTGCAGATC CCGGCGGGCT ACTGGACCAA TTGGGGCGGC CAGTTCGAGC AACTGCAATC GGCCGCCAAA CGCCTGCAAA TCGTCGTGCC GGTGGCATTG CTGCTGGTCC TCGCACTGTT GTTCATGATG TTCAACAACC TCAAGGACGG CCTGCTGGTG TTCACCGGCA TACCGTTCGC CCTCACCGGC GGCGTCATGG CCCTGTGGCT GCGCGACATT CCCCTGTCGA TCTCCGCAGG CGTGGGCTTC ATCGCCCTGT CGGGTGTGGC CGTGCTGAAC GGCCTGGTGA TGATCTCTTT CATCCGCAGC CTGCGCGAAG AAGGCCGCTC GTTGCACGAC GCCATCAACG AAGGCGCCCT CACCCGCCTG CGCCCGGTGC TGATGACCGC CCTCGTCGCC TCCCTGGGCT TCATCCCCAT GGCCCTTGCC ACCGGAACTG GCGCGGAAGT GCAGCGGCCA CTGGCAACGG TGGTGATTGG CGGGATTCTG TCGTCTACGG CGCTGACGTT GCTGGTGCTG CCGGCGTTGT ATCAGTGGGC GCATCGGCGC GAGGAGGAGC AGGAAGAGGA TGAGGTCAAG GCGCTGAAAT AG
|
Protein sequence | MFERLIQFAI EQRIVVMLAV LLMAGLGIAS YQKLPIDAVP DITNVQVQIN TSAPGFSPLE TEQRVTFAIE TNMAGLPGLQ QTRSLSRSGL SQVTVIFEDG TDLFFARQLV GERLQIAKDQ LPEGVDAMMG PISTGLGEIF LWTVEARDGA LKEDGTPYTP TDLRVIQDWI IKPQLRNVPG VAEINTIGGF AKQYQIAPDP KKLAAYKLTL NDLVAALERN NANVGAGYIE RGGEQLLIRA PGQLGTVDDI ANIVIANVQG TPIRISSVAE VGIGKEMRSG AATENGREVV LGTVFMLIGE NSRTVSQAVA AKLADINRTL PEGVEAVTVY DRTNLVEKAI ATVKKNLIEG AILVIVILFL FLGNIRAALI TAMVIPLAML FTFTGMFTNK VSANLMSLGA LDFGIIVDGA VVIVENAIRR LAHAQKKYGR MLTRSERFHE VFAAAREARR PLIFGQLIIM VVYLPIFALT GVEGKMFHPM AFTVVIALLG AMILSVTFVP AAIAMFVTGK VKEEEGFVMR TARQRYAPIL SWVLSHRAIA FGMAFVLIVL SGFTASRMGS EFIPSLSEGD FALQALRVPG TSLSQSVDMQ QRLEKAIIEK VPEVQRVFAR TGTAEIAADP MPPNISDSYV MLKPQSEWPD PDKSRETLIA DLQKAAASVP GSNYELSQPI QLRFNELVSG VRSDVAVKVF GDDMNVLNQT AAKIAATLQK VPGASEVKVE QTTGLPVLTI NIDRDKAARY GLNVADVQDA IAIALGGRQA GTLYEGDRRF DMVVRLSEQL RTDVDGLSSL LIPVPANASS QQISFIALSQ VASLDLVLGP NQISRENGKR VVIVSANVRG RDLGSFVEEA GTTIDSGVQI PAGYWTNWGG QFEQLQSAAK RLQIVVPVAL LLVLALLFMM FNNLKDGLLV FTGIPFALTG GVMALWLRDI PLSISAGVGF IALSGVAVLN GLVMISFIRS LREEGRSLHD AINEGALTRL RPVLMTALVA SLGFIPMALA TGTGAEVQRP LATVVIGGIL SSTALTLLVL PALYQWAHRR EEEQEEDEVK ALK
|
| |