Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0361 |
Symbol | typA |
ID | 1181970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 394429 |
End bp | 396249 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637391729 |
Product | GTP-binding protein TypA |
Protein accession | NP_790210 |
Protein GI | 28867591 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATCGAAA ATCTACGCAA CATCGCCATC ATTGCTCACG TTGACCATGG TAAGACCACC CTGGTAGACA AACTCCTGCG TCAATCCGGC ACTCTGGAGC GCGGCGAGCT CAACGATGAG CGCGTGATGG ACTCCAACGA CCAGGAAAAA GAGCGCGGTA TTACCATTCT CGCGAAGAAC ACCGCGATCA ACTGGAATGG CTACCACATC AACATCGTGG ACACCCCGGG CCACGCCGAC TTCGGTGGTG AAGTAGAGCG CGTGATGTCG ATGGTTGACT CCGTACTGCT GCTGGTCGAT GCCCAGGACG GCCCTATGCC GCAAACCCGC TTTGTGACCA AGAAGGCTTT CGAAGCCGGC CTGCGTCCAA TCGTGGTCAT CAACAAGGTT GACCGTCCAG GCGCGCGTCC GGACTGGGTT CTGGATCAGA TCTTCGACCT GTTCGACAAC CTGGGTGCTA CCGAAGAACA GCTGGACTTC AAAGTCGTCT ACGCCTCTGC CCTGAACGGC ATTGCCGGTC TGGACCACAC CGAAATGGCT GAAGACATGA CCCCGCTGTA TCAGTCCATC GTCGACAACG TTCCGGCACC TGCCGTTGAC CGTGACGGCC CGTTCCAGAT GCAAATCTCG GCACTGGACT ACAACAGCTT CCTGGGCATC ATCGGCGTTG GCCGTATTGC TCGCGGCAAG GTCAAGCCAA ACACCCAGGT TGTGGCTATC GACGCCAACG GCAAGCGCCG TAACGGTCGT ATCCTGAAAC TGATGGGTCA CCACGGTCTG CACCGTGTAG ACGTCGAAGA AGCAGCTGCC GGCGACATCG TCTGCATCAG CGGCTTCGAA GAGCTGTTCA TCTCCGACAC CCTGTGCGAC CCACAGAACG TTGAAGCGAT GAAGCCGCTG ACCGTTGACG AACCTACCGT TTCCATGACG TTCCAGGTAA ACGACTCGCC TTTCTGCGGT AAAGAAGGCA AGTTCGTCAC CAGCCGTAAC ATCAAGGAAC GTCTGGACAA AGAACTGCTG TACAACGTTG CCCTGCGCGT TGAAGAAGGC GACACCGCCG ACAAGTTCAA GGTCTCCGGC CGTGGTGAGC TGCACCTCTC GGTACTGATC GAAACCATGC GTCGCGAAGG CTTCGAAATG GGTGTTGGTC GTCCTGAAGT GATCATCCGC ATGGTTGATG GCGTCAAGCA CGAACCGTTC GAGAACGTCA CCATCGACCT GCCGGAAGAA TCCCAGGGTT CCATCATGGA ACAGATCGGT ATCCGTAAGG GCGACCTGAC CAACATGGTT CCGGATGGCA AGGGCCGTGT TCGTCTTGAA TACAACATCC CTGCTCGTGG CCTGATCGGT TTCCGTAACG AATTCCTGAC CCTGACTTCC GGCGCAGGCA TTCTGACCAG CATCTTCGAC CGTTACGACG TGATGAAGTC TGGCGACATG TCCGGCCGTC AGAACGGCGT TCTGGTTTCG GTTGCTACCG GCAAGGCACT GACCTACTCC CTGGAAACAC TGCAAGCCCG TGGCAAGCTG TTCCTGGGTC ATGGCGAAGA TGTGTACGAA GGTCAGATCG TCGGCATCAA CAGCCGCGAC AACGACCTGG GTGTAAACCC AACCAAGGGC AAGAAGCTCG ACAACATGCG TGCTTCCGGT AAAGACGAAA CCATCGCTCT GGTTCCGCCT ATCCGCTTCA CTCTGGAACA AGCGCTGGAA TTCGTACAAG AAGACGAACT CTGCGAAGTG ACTCCAAAGT CGATCCGCCT GCGTAAGAAA ATCCTTGGCG AAAGCGAGCG TACCCGCGCT GCCAAGAAGT CGGGCAACTG A
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Protein sequence | MIENLRNIAI IAHVDHGKTT LVDKLLRQSG TLERGELNDE RVMDSNDQEK ERGITILAKN TAINWNGYHI NIVDTPGHAD FGGEVERVMS MVDSVLLLVD AQDGPMPQTR FVTKKAFEAG LRPIVVINKV DRPGARPDWV LDQIFDLFDN LGATEEQLDF KVVYASALNG IAGLDHTEMA EDMTPLYQSI VDNVPAPAVD RDGPFQMQIS ALDYNSFLGI IGVGRIARGK VKPNTQVVAI DANGKRRNGR ILKLMGHHGL HRVDVEEAAA GDIVCISGFE ELFISDTLCD PQNVEAMKPL TVDEPTVSMT FQVNDSPFCG KEGKFVTSRN IKERLDKELL YNVALRVEEG DTADKFKVSG RGELHLSVLI ETMRREGFEM GVGRPEVIIR MVDGVKHEPF ENVTIDLPEE SQGSIMEQIG IRKGDLTNMV PDGKGRVRLE YNIPARGLIG FRNEFLTLTS GAGILTSIFD RYDVMKSGDM SGRQNGVLVS VATGKALTYS LETLQARGKL FLGHGEDVYE GQIVGINSRD NDLGVNPTKG KKLDNMRASG KDETIALVPP IRFTLEQALE FVQEDELCEV TPKSIRLRKK ILGESERTRA AKKSGN
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