| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0340 |
|---|
| Symbol | |
|---|
| ID | 1181949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 370539 |
|---|
| End bp | 371414 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391709 |
|---|
| Product | endonuclease/exonuclease/phosphatase family protein |
|---|
| Protein accession | NP_790190 |
|---|
| Protein GI | 28867571 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3568] Metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCT GGGGCAAAGG CAGCCCGCGT ATCGTTGGCC TGCATGATCC GCAGGTCAAC
GAACATCATC TGACGCAAAG CGGCTTGCCG GAAGACGGCA GGCTGCGGCT GCTCAGTTTC
AATATCCAGG TCGGTATCAG CACCGAGCGC TACCGGCATT ACCTGACGCG CAGCTGGCAA
CACCTGCTGC CGCACGTCGG CCGGGCTGGC AACCTGCAGA AGATCGGCGA CCTGATCAAC
GATTTCGATC TGGTCGCCTT GCAGGAAGTC GATGGCGGAA GCATGCGCTC CGGCTTCGTC
AATCAGGTCG AGCATCTCGC CCAGCTGGGC GGTTTCCCGT TCTGGTATCA GCAGCTCAAT
CGCAACCTCG GACGCTTTGC CCAGCACAGC AACGGTGTAT TGAGCCGCCT GCGTCCGACC
AAGATCGAAG ATCATCCTCT GCCGGGTCCG GCAGGGCGCG GGGCCATTCT TGTCCGCTTC
GGCGAAGGCG AAGATGCGCT GGTGGTGGTC ATGATGCACC TGGCTCTGGG TACTCGTACC
AGAACCCGGC AACTGGCCTA CATTCGCGAG CTGATCGGCG GTTATCGTCA TCAAGTGCTG
ATGGGCGACA TGAACACCCA CGCCAACGAT CTGCTGGAAC ACTCGCCGCT GCGTGACCTT
GGCCTGCTGG CCCCGCAGAT CGAAGCGACC TTTCCGAGCT GGCGGCCACA ACGCTGCCTT
GATCACATTT TGCTCAGCCC GACCCTGACA CTTGAACGCG TGCAGGTGCT GGCTCACCCT
ATTTCCGATC ACCTGCCGGT TGCTGTCGAG ATCCGCCTGC CCGCTTCACT GCACGGGGAC
TCGCTGCCTG TGCCTTCTGG TGGAAACCTT GCATGA
|
|---|
| Protein sequence | MRRWGKGSPR IVGLHDPQVN EHHLTQSGLP EDGRLRLLSF NIQVGISTER YRHYLTRSWQ
HLLPHVGRAG NLQKIGDLIN DFDLVALQEV DGGSMRSGFV NQVEHLAQLG GFPFWYQQLN
RNLGRFAQHS NGVLSRLRPT KIEDHPLPGP AGRGAILVRF GEGEDALVVV MMHLALGTRT
RTRQLAYIRE LIGGYRHQVL MGDMNTHAND LLEHSPLRDL GLLAPQIEAT FPSWRPQRCL
DHILLSPTLT LERVQVLAHP ISDHLPVAVE IRLPASLHGD SLPVPSGGNL A
|
|---|
| |