| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0327 |
|---|
| Symbol | |
|---|
| ID | 1181936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 356256 |
|---|
| End bp | 358577 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391696 |
|---|
| Product | S1 RNA binding domain protein |
|---|
| Protein accession | NP_790177 |
|---|
| Protein GI | 28867558 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCA TCAACAGCCG CATCGCCGAA GAACTCGGCG TACGCCCACA ACAGGTCGCA
GCGGCCGTAG CACTACTGGA TGAAGGCTCG ACCGTGCCCT TCATTTCCCG CTACCGCAAG
GAAGTGACCG GCAGTCTCGA TGACACGCAA TTACGCCATC TGGAAGAACG TCTGCGCTAT
CTGCGCGAAC TGGACGACCG GCGCGTCAGC ATTCTTGCCA GCATCGAAGA GCAAGGCAAG
CTGACCCCGG AACTGGCTCG CGACATCAAG CTGGCCGACA CCAAGACCCG CCTTGAAGAT
TTGTACCTGC CTTATAAGCA GAAACGCCGT ACCAAGGGCC AGATCGCCCT TGAAGCGGGC
CTCGGCGAGC TGGCTGATGG CCTGTTCAAC GACCCGAGCC TGACCCCGGA CGCCGAGGCC
GCCCGTTTTG TCGACGCCGA GAAAGGCGTG GCCGACGTGA AAGCTGCGCT GGAAGGCGCC
AAGTACATCC TGATGGAGCG CTTCGCCGAA GACGCCTCGC TGCTGGACAA ACTGCGCAGC
TTTCTCAAGC AGGAAGCGGT GATCAGCGCG CGCGTGGTGC CGGGCAAGGA AGAGGAAGGC
TCCAAGTTCC GTGACTACTT CGAACACGAC GAGCCGCTCA AAAGCATGCC GTCGCATCGC
GCGCTGGCAA TTTTCCGTGG CCGCAACGAA GGTTTTCTCA GCTCAGCACT GAAAGTCGGT
GAAGAACTGC CAGGTGCCAT GCACCCGTGC GAACTGATGA TCGGCGAGCG TTTCGGCATC
CAGAACCAGA GCCGTGCGGC GGACAAATGG CTGGCCGAAG TGGTGCGCTG GACCTGGAAG
GTCAAGCTGT ATAGCCATCT GGAAACCGAT CTGCTGGGTG AGTTGCGTGA AGGCGCTGAA
ACCGAAGCCA TCAACGTGTT CGCCCACAAC CTGCACGACC TGCTGCTCGC CGCCCCGGCT
GGCCAGCGCG CCACGCTTGG CCTGGACCCG GGCCTGCGCA CCGGCTGCAA GGTCGCGGTC
GTGGATGCCA CCGGCAAACT GCTCGACTAC GCGACTGTTT ATCCGCATGT GCCGAAAAAT
CAGTGGGATC AGACCATCGC CGTGCTGGCC GCCCTGTGCG CCAAGCATTC GGTCGACTTG
ATCGCCATCG GCAATGGCAC CGCCAGCCGC GAAACCGACA AGCTGGCCGC CGACCTGATC
AAAAAATACC CAGGCCTGAA AATGACCAAG GTCATGGTTT CCGAAGCTGG CGCATCGGTG
TACTCGGCGT CGGAACTGGC CGCCAAGGAA TTCCCGGACC TCGACGTGTC GATCCGTGGC
GCAGTATCGA TTGCCCGCCG TTTGCAGGAC CCACTGGCCG AACTGGTGAA AATCGACCCG
AAATCCATTG GTGTCGGCCA GTATCAGCAC GACGTGTCGC AGCTCAAACT GGCTCGCGGC
CTGGACGCGG TGGTTGAAGA CTGCGTGAAC GCAGTGGGCG TGGACGTAAA CACCGCGTCG
GTGGCGCTGC TGGCGCGAAT TTCCGGCCTC AACACCACGC TGGCGCAGAA TATCGTCGCG
CATCGCGATG AAAACGGTGC GTTCAAGACC CGCGCAGCGC TGAAGAAAGT CAGCCGTCTG
GGCGAGAAGA CCTTTGAGCA GGCCGCAGGC TTCCTGCGCG TCATGACCGG TGACAACCCG
CTGGACTCTT CTGCCGTTCA CCCGGAAGCC TACCCGCTGG TGCAGCGTAT TGCGGCTGAA
ACCGACCGCG ACATCCGTTC GCTGATCGGC GACGCCAGCT TTCTCAAGCG TCTGGACCCG
AAGAAGTTCA CCGACGAGAC CTTTGGTCTG CCAACCGTCA CCGACATTCT CCAGGAACTC
GAAAAACCGG GCCGCGACCC GCGTCCGGAG TTCAAGACCG CTGAATTTCA GGAAGGCGTC
GAGGACCTCA AGGACCTGCA ACCGGGCATG ATCCTCGAAG GTGTTGTTAC CAACGTTACC
AACTTCGGTG CTTTCGTCGA CATCGGCGTG CATCAGGACG GTCTGGTGCA CATCTCGGCG
CTGTCCGAGA AGTTCATCAA GGACCCGCGC GAAGCGGTCA AGGCCGGTGA TGTGGTGAAA
GTGAAGGTCA TGGAAATCGA CATCCCGCGC AAACGCGTCG GCCTGTCGAT GCGCATGAGC
GACACGCCCG GCGAGAAAAT CGACGGTGCG CGCGGCGCAC GCCCTGGTGC CTCGCCTCGC
CAGCAGAACA GCGCCCCGCG CAAGGAAACC ACTGCTCCGG CACCGGCCAA CAACGCCATG
GCCTCGCTGT TCGCCAACGC CAAGCAATTG AAGAAGCGCT GA
|
|---|
| Protein sequence | MDSINSRIAE ELGVRPQQVA AAVALLDEGS TVPFISRYRK EVTGSLDDTQ LRHLEERLRY
LRELDDRRVS ILASIEEQGK LTPELARDIK LADTKTRLED LYLPYKQKRR TKGQIALEAG
LGELADGLFN DPSLTPDAEA ARFVDAEKGV ADVKAALEGA KYILMERFAE DASLLDKLRS
FLKQEAVISA RVVPGKEEEG SKFRDYFEHD EPLKSMPSHR ALAIFRGRNE GFLSSALKVG
EELPGAMHPC ELMIGERFGI QNQSRAADKW LAEVVRWTWK VKLYSHLETD LLGELREGAE
TEAINVFAHN LHDLLLAAPA GQRATLGLDP GLRTGCKVAV VDATGKLLDY ATVYPHVPKN
QWDQTIAVLA ALCAKHSVDL IAIGNGTASR ETDKLAADLI KKYPGLKMTK VMVSEAGASV
YSASELAAKE FPDLDVSIRG AVSIARRLQD PLAELVKIDP KSIGVGQYQH DVSQLKLARG
LDAVVEDCVN AVGVDVNTAS VALLARISGL NTTLAQNIVA HRDENGAFKT RAALKKVSRL
GEKTFEQAAG FLRVMTGDNP LDSSAVHPEA YPLVQRIAAE TDRDIRSLIG DASFLKRLDP
KKFTDETFGL PTVTDILQEL EKPGRDPRPE FKTAEFQEGV EDLKDLQPGM ILEGVVTNVT
NFGAFVDIGV HQDGLVHISA LSEKFIKDPR EAVKAGDVVK VKVMEIDIPR KRVGLSMRMS
DTPGEKIDGA RGARPGASPR QQNSAPRKET TAPAPANNAM ASLFANAKQL KKR
|
|---|
| |