| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0252 |
|---|
| Symbol | |
|---|
| ID | 1181860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 273152 |
|---|
| End bp | 274993 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637391621 |
|---|
| Product | peptide ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_790103 |
|---|
| Protein GI | 28867484 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGT TGATTCGCGT ACAAGACCTG CGCGTGGTTG CCGAGGGCGA TCACGGTGAA
CTGGAAATCG TCAAAGGCGT CAGCTTCGCA CTGGAAAAAG GTGAAGTGCT GGCGTTGATC
GGCGAGTCCG GCTCGGGCAA GACGACTATT GCGCTGGCAC TGCTGGGTTA TGCCCGGCGC
GGCTGCAAAC TGGCAGGCGG CGTGGTTCGG GTCGGCGAGC ATGACATGCT CAGCCTGCCC
GAAAGCCAGT TGCAGGGCCT GCGTGGCAAT CGCGTTTCGT ACGTCGCGCA AAGTGCCGCC
GCGGCGTTCA ACCCGGCGAA AAAGCTCATC GATCAAGTGA TCGAGGGCGC GCTGATTCAC
GGTCTGGGCA GTCGTGCAGA CTTGCAGGCC AAAGCCATCG AGCTGTTCCG CGATCTGGCC
TTGCCCAACC CGGAAACCAT TGGCCAGCGT TATCCGCACC AGGTGTCGGG CGGGCAGTTG
CAACGGGTGA TGGCGGCGAT GGCGCTGATC AGCGACCCGT TGCTGGTGAT CCTCGACGAA
CCGACCACCG CACTGGACGT CACCACGCAG ATCGACGTGC TGCGCGCCTT CAAGCGTGTA
GTGCGCGAGC GCGGCGCGAC GGCGGTCTAT GTCTCCCACG ACCTTGCAGT GGTGGCGCAG
ATGGCTGATC AGATCGTGGT GCTCAACGGC GGGCGGATCA TCGAACAGAG CAGTACGGCG
GCATTGCTCA AAGGCCCGGA AGACCCGTAC ACCCGCAGCC TGCTGGCAGC GGCGCGGCCG
GATAAAGTGC TGAAACCGGC CAGCGAGGTG GTCAAGGACA GCACCCTGTT GACCATCAAA
GGGCTGACCG CCGGCTACGG CAAAAAGAAC CTGCAAGGCA TGCCGATGAT TCGCGTGCTG
GAAGACATCG ACCTGACCAT CCGCCGTGGC CAGGCCATCG GCGTGATTGG CGAGTCGGGC
TCGGGCAAAT CGACCCTGGC CCGTGTGGTA GCCGGTCTGC TGGATCCGGC CCACGGCAGC
CTGACGTTTG ACGGCGCTGA ACTGTCAGGC ACCTTGGCGG GGCGCACCGA AGAGCAGTTC
CGGCGCATCC AGATGGTGTT TCAGAACGCC GACACCGCGC TCAACCCGAT GCACAGCGTC
GGTGCGATTC TCGCCCGGCC GCTGAAAATG TATTTCGGTC TCAAGGGCAA GGCGTTGCGC
GAGCGTATCG ACGAGTTGAT GGACCTGGTG CGTCTGCCAC GCGAGCTGGC CGAGCGGCGC
CCCAATGAAC TGTCGGGCGG GCAGAAGCAA CGCGTTAACC TGGCCCGTGC ACTGGCCGCC
AAACCAGACC TTATTCTTTG CGATGAAGTC ACCTCGGCGC TCGATACCGT GGTCGGTGCC
TGCATCCTCG AACTGCTCGG CGAACTGCGC CGCAAGCTGG GTGTTTCCTA CCTGTTCATC
AGCCATGACA TTTCCACCGT CCGCGCGCTG TGCGACGACA TTGTGGTGAT GTACAGCGGC
CACAAGGTCG AAGAGGGCAG CCGTGAAACC TTCAGCCACG TACCGTTCCA TCCGTATACC
GATCTGTTGG TGCACTCGGT GCCGGAACTG CGTCAGGGCT GGCTGGAAAG CTGCGGCGTG
ACCAGTGGCA AACTGCCGCC GATCAGCGCC CCGGTCAACA ACCGGGAGCT GTGCACTTTT
CTCAATCGCT GCCCGGCGCG GATCGAAGGC CTGTGCAACA GGACCGCGCC TGGCCGTCGT
CGCATTGCAG GCGGCAGCGA AATTCTTTGC CATCGCGACA GCGACGAACT GCAAGCCGTA
CAAGAAAACC TTAATCCTGT GACCGTGGGA GCCTACGCAT GA
|
|---|
| Protein sequence | MSQLIRVQDL RVVAEGDHGE LEIVKGVSFA LEKGEVLALI GESGSGKTTI ALALLGYARR
GCKLAGGVVR VGEHDMLSLP ESQLQGLRGN RVSYVAQSAA AAFNPAKKLI DQVIEGALIH
GLGSRADLQA KAIELFRDLA LPNPETIGQR YPHQVSGGQL QRVMAAMALI SDPLLVILDE
PTTALDVTTQ IDVLRAFKRV VRERGATAVY VSHDLAVVAQ MADQIVVLNG GRIIEQSSTA
ALLKGPEDPY TRSLLAAARP DKVLKPASEV VKDSTLLTIK GLTAGYGKKN LQGMPMIRVL
EDIDLTIRRG QAIGVIGESG SGKSTLARVV AGLLDPAHGS LTFDGAELSG TLAGRTEEQF
RRIQMVFQNA DTALNPMHSV GAILARPLKM YFGLKGKALR ERIDELMDLV RLPRELAERR
PNELSGGQKQ RVNLARALAA KPDLILCDEV TSALDTVVGA CILELLGELR RKLGVSYLFI
SHDISTVRAL CDDIVVMYSG HKVEEGSRET FSHVPFHPYT DLLVHSVPEL RQGWLESCGV
TSGKLPPISA PVNNRELCTF LNRCPARIEG LCNRTAPGRR RIAGGSEILC HRDSDELQAV
QENLNPVTVG AYA
|
|---|
| |