| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0224 |
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| Symbol | dapF |
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| ID | 1181832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 245570 |
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| End bp | 246400 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637391593 |
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| Product | diaminopimelate epimerase |
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| Protein accession | NP_790075 |
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| Protein GI | 28867456 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCTGC GTTTTACCAA GATGCACGGG CTGGGTAACG ACTTCATGGT CCTGGACCTG
GTGAGTCAGC ACGCGCACAT TTTGCCCAAG CACGCCAAAC AATGGGGCGA CCGCCACACC
GGCATCGGTT TCGATCAGCT GTTGCTGGTC GAGGCACCGA ACAACCCGGA CGTGGACTTT
CGCTACCGGA TCTTCAACTC GGACGGCTCC GAAGTCGAAC AGTGTGGCAA CGGCGCACGC
TGCTTTGCCC GCTTCGTACT CGACAAGCGT CTGACCGCCA AGAAACAGAT ACGCGTCGAG
ACCAAAGGCG GCATTATCGA GCTGGAGATC CGCAGCGACG GGCAGATCAG CGTCGATATG
GGACCGCCGC GCCTCGTGCC GGAAGAGATC CCGTTTCAGG CCGCGGAGCA AGCCAAAAGC
TACTCGCTCG ACGTAGACGG GCAGACAGTC GAGCTGGCGG CCGTGTCGAT GGGCAATCCT
CACGCCGTGC TGCGCGTCGA TGACATCAAC AATGCGCCTG TGCACACACT AGGCCCGAAG
ATCGAACATC ACCCGCGCTT TCCGGCACGG GTCAACGTCG GCTTCCTGCA CGTTGTGGAC
CGCCAGCGTG CGCAGTTGCG CGTCTGGGAA CGCGGCGCCG GGGAAACCCA GGCCTGCGGC
ACCGGGGCCT GCGCAGCGGC AGTGGCCGCC ATCAGCCAGG GCTGGATGGA TTCGCCATTG
CTGATCGACC TGCCCGGAGG TCGCCTGTCC ATCGAGTGGG CAGGCCCGGG ACACCCTGTC
ATGATGACCG GCCCTGCTAC AAGGGTCTAC GAAGGCCAAG TTCGTCTTTA A
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| Protein sequence | MLLRFTKMHG LGNDFMVLDL VSQHAHILPK HAKQWGDRHT GIGFDQLLLV EAPNNPDVDF
RYRIFNSDGS EVEQCGNGAR CFARFVLDKR LTAKKQIRVE TKGGIIELEI RSDGQISVDM
GPPRLVPEEI PFQAAEQAKS YSLDVDGQTV ELAAVSMGNP HAVLRVDDIN NAPVHTLGPK
IEHHPRFPAR VNVGFLHVVD RQRAQLRVWE RGAGETQACG TGACAAAVAA ISQGWMDSPL
LIDLPGGRLS IEWAGPGHPV MMTGPATRVY EGQVRL
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