Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0223 |
Symbol | |
ID | 1181831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 244822 |
End bp | 245556 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391592 |
Product | hypothetical protein |
Protein accession | NP_790074 |
Protein GI | 28867455 |
COG category | [S] Function unknown |
COG ID | [COG3159] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.282298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGATC AGCCTCCCGC TTCAACCGGC ACCCCCAGCG AATCGCCTGT CGATAGCGCA GCGCCAGACC TTGAAGCAGA AGCGGTCATC GCTTTCCTGC TTGAGCATCC TCAATTCTTC GCCGAGCATG ACGAGCTGCT GGTGTCGATG CGCATTCCTC ACCAGCGTGG CGACACCGTC TCGCTGGTCG AGCGTCAGCT CAATCTGCTG CGCGAGCGCA ACATCGAAAT GCGCCATCGC CTCTCACAAC TGATGGACGT GGCACGCGAC AACGACCGTC TGTTCGAGAA AACCCGTCGC CTGAACCTCG CGCTGATGGA CGCCACCAGC CTGGACGAGC TGGTGATCGC CGTGGAAGAC AGCCTGCGCC AGGATTTTCA GGTGCCTTTC GTCAGCCTGA TTCTATTCAG CGACAGCCCG ATGCCAGTGG GCCGCTGGGT CAGCAGTGCC GAGGCACAGA AAGCCATCGG CGGTCTGATT GGCGAGAAGA TCATCTGCGG CGCGCTGCGT GAGCATGAGC TGGCATTTCT GTTCGGTGCC GAGCAAGGCA AGGAAGTCGG TTCGACCGCC ATCGCCAGCC TTAACCATCT GGGCCTGCAT GGCGTGCTGG CCATCGGCAG CCGTGACCCA CAGCATTACA AAAGCTCGGT CGGCACGCTG TTCCTCAGTT ATATCGCTGA CGTACTGAGC CGTCTGCTGC CCCGCTTCGC CCATTCGCTG CGTTCGGTCC GCTAG
|
Protein sequence | MTDQPPASTG TPSESPVDSA APDLEAEAVI AFLLEHPQFF AEHDELLVSM RIPHQRGDTV SLVERQLNLL RERNIEMRHR LSQLMDVARD NDRLFEKTRR LNLALMDATS LDELVIAVED SLRQDFQVPF VSLILFSDSP MPVGRWVSSA EAQKAIGGLI GEKIICGALR EHELAFLFGA EQGKEVGSTA IASLNHLGLH GVLAIGSRDP QHYKSSVGTL FLSYIADVLS RLLPRFAHSL RSVR
|
| |