Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0170 |
Symbol | hemF |
ID | 1181778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 190442 |
End bp | 191356 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637391547 |
Product | coproporphyrinogen III oxidase, aerobic |
Protein accession | NP_790029 |
Protein GI | 28867410 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0408] Coproporphyrinogen III oxidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTACCC GTACCGAGGC CGTAAAAGCC TACCTGCTCG ACCTGCAAGA CCGTATCTGC ACCGCGCTCG AGCAGGAAGA TGGCAACGCA CACTTCGTGG AAGATGCCTG GACACGTCCG GCGGGCGGCG GTGGTCGCAC GCGGGTGGTC GAGAATGGCG CGGTCATCGA GAAAGGCGGC GTCAACTTTT CCCATGTGTT CGGCAGCAAC CTGCCGCCGT CAGCCAGTGC GCATCGGCCT GAATTGGCCG GGCGTGGTTT CGAGGCGCTG GGCGTGTCGC TGGTGATCCA TCCGCACAGC CCGCATGTGC CGACGTCTCA CGCCAACGTG CGGTTTTTCA TCGCTGAAAA AGAAGGCGAA GAGCCGGTGT GGTGGTTCGG CGGTGGTTTC GACCTGACGC CTTACTATGG CGTTGAAGAA GACTGCGTGC ACTGGCACCG GGTCGCGGAG CGGGCCTGCG CGCCCTTCGG CGATGATGTT TACCCGCGTT ACAAGGCGTG GTGCGACAGC TATTTCCACC TCAAGCACCG CGACGAGCCG CGCGGCATCG GCGGTCTGTT TTTCGATGAC GTGAACCAGT GGGATTTCGA CACCAGCTTC GCATTCATTC GCGCCATCGG CGATGCATTC ATCAATGCCT ACCTGCCGAT CGTGCGCCGT CGCAAGGCTG CGGCCTATAC CGTGCAGCAG CGCGAGTTTC AGGAATTCCG CCGTGGACGC TACGTCGAGT TCAACCTGGT GTACGACCGC GGCACGCTGT TTGGTCTGCA ATCGGGTGGT CGTACCGAGT CGATCCTCAT GTCGCTGCCG CCGCAAGTAC GCTGGGGCTA TGACTGGAAA GCCGCGCCGG GCAGCGAAGA GGCGCGTCTG ACTGATTACT TCCTGACTGA TCGCGACTGG CTGGCGGATA ACTGA
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Protein sequence | MSTRTEAVKA YLLDLQDRIC TALEQEDGNA HFVEDAWTRP AGGGGRTRVV ENGAVIEKGG VNFSHVFGSN LPPSASAHRP ELAGRGFEAL GVSLVIHPHS PHVPTSHANV RFFIAEKEGE EPVWWFGGGF DLTPYYGVEE DCVHWHRVAE RACAPFGDDV YPRYKAWCDS YFHLKHRDEP RGIGGLFFDD VNQWDFDTSF AFIRAIGDAF INAYLPIVRR RKAAAYTVQQ REFQEFRRGR YVEFNLVYDR GTLFGLQSGG RTESILMSLP PQVRWGYDWK AAPGSEEARL TDYFLTDRDW LADN
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