Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0159 |
Symbol | trpA |
ID | 1181767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 180074 |
End bp | 180886 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637391536 |
Product | tryptophan synthase, alpha subunit |
Protein accession | NP_790018 |
Protein GI | 28867399 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0159] Tryptophan synthase alpha chain |
TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGTC TCGAACAACG TTTCGCCCAG CTGAAAACCG AAGGTCGCGC GGTACTGGTC ACCTTCATCA CCGCTGGCGA CCCTGGCTAC GACACCTCGC TGAAAGTGCT CAAAGGCCTG CCCGCTGCAG GTGCTGACGT GATCGAGCTG GGCATGCCGT TTACCGATCC GATGGCTGAT GGTGTGGCCA TTCAGCTGGC CACGTTGCGC GCCCTGGACG CCGGCCAGAC GTTGCTGAAA ACCTTGCAGA TGGTCAGCGA GTTTCGTGTC GACGATCAGA CCACGCCGAT TGTGCTGATG GGTTATTACA ACCCGATCCA CCGTTTTGGC GTCGAAGCGT TCGTGGCACA GGCCAAGGAA GCGGGCGTCG ATGGCTTGAT CATCGTTGAC CTGCCGCCCG AGCATGACGC CGAACTGGCG ACGCCTGCAC AGGCGTCCGG CATCGACTTC ATCCGCCTGA CCACGCCGAC TACCGACGAT GCGCGTCTGC CGCGCGTACT GGAGCGCAGT TCCGGTTTCG TCTACTACGT GTCGGTCGCC GGTGTGACCG GTGCGGGTTC AGCGACCACC GAGCACGTCA CCGAAGCCAT CGCACGCCTG CGTCGCCACA CCAGCCTGCC GATCAGCGTC GGTTTCGGTA TCCGCACACC TGAGCAGGCA GCGGCCATTG CGCGTCTGGC TGACGGTGTT GTGGTGGGCT CGGCGTTCGT CGACAAGATC GCCACAGCCG AGTCGCCGGA GCAGGCAATC GATGGCGTGT TGACGCTGTG CGCCGCACTG GCCGAAGGCG TACGTAACGC CCGCGTCAGT TGA
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Protein sequence | MSRLEQRFAQ LKTEGRAVLV TFITAGDPGY DTSLKVLKGL PAAGADVIEL GMPFTDPMAD GVAIQLATLR ALDAGQTLLK TLQMVSEFRV DDQTTPIVLM GYYNPIHRFG VEAFVAQAKE AGVDGLIIVD LPPEHDAELA TPAQASGIDF IRLTTPTTDD ARLPRVLERS SGFVYYVSVA GVTGAGSATT EHVTEAIARL RRHTSLPISV GFGIRTPEQA AAIARLADGV VVGSAFVDKI ATAESPEQAI DGVLTLCAAL AEGVRNARVS
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