| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0111 |
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| Symbol | |
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| ID | 1181719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 130125 |
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| End bp | 131444 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391488 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_789970 |
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| Protein GI | 28867351 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACTCA TCGCCACCGA TCTGCCCGGC AGCCGCATGC AATCGCTGGT GTCGTACCTC
GAACACGACG TGCAGCCGAC CATTGTTCTG GACACCGATT ACAACATCAT CGCTGCCAAC
ACGGCCTATC AGCGCCAGTT CGGGGTCGAG GGCATGCCGC ACGTGGGCGA AAAGTGCTAC
CGGGTTTCCC ATCAGTTTGC AGTGCCCTGC GACCAGGCCG GTGAGCATTG CCCGATGCGC
AAGGCTGATG AGACGCGGCG TCCGGAGCGC TTGCTGCACA TTCACCACAC ACCGCGTGGC
CCGGAACATG TGGATGTGGA GCTGCGGCCG ATCCTTGATG ATCGTGGCGA GGTCATTGCC
TATGTCGAAC GACTGACATC GGTGGCAGTG GCTTCGGTCC AGCCTCAGCA GCACGGGCTG
GTCGGTCGTT CGGCGGCTTT CAAGGACGTC TTGAGTGCGT TGCAACGTGC CGCACCCGCG
CAGATTCCCG TGCTGCTGCA AGGTGAGTCC GGGACCGGCA AAGAGCTGTT TGCCCGCGCG
CTGCACGCCA GCAGCTCAAG GTCCGCCGGG CCATTGGTGG TGGTCGACTG CACGGGCCTG
ACGGAGAACC TGCTGGAAAG CGAGCTGTTC GGCTATGAAA AAGGCGCCTT CACCGGCGCT
TTGCAACGCA AGACCGGCCT GGCCGAAGCG GCGCATGGCG GCACCTTGTT TCTGGACGAG
ATCGGCGAGG TGCCGCTGGC CATGCAGGTC AAGCTGTTGA GGTTGATCGA GTCCGGCAGC
TTTCGTCCGG TGGGCAGCCT GAGAACCGTG CACTCGGATT TCCGTCTGGT GGCTGCCACC
CACAAACCGA TCAAGGACAT GGTCGCCGAA GGTAGTTTTC GCCAGGACCT GTTTTACCGC
ATCAGCGCAT TCCCGATTCG CTTACCCGCT CTGCGCGAAC GCAGCGAAGA CCTGCCATTG
CTGATCGACA GCCTGCTGCA ACGCACCTCA CAGGGCGCTG CACCGCGCAT CGATGCCCAT
GCCATGAAGC TGCTGAGCCA CTACCACTAC CCGGGCAACA TCCGCGAACT GCGCAACATC
CTTGAACGCG CCCGACTGTT TACCGATGAC GGCATCATTC GCGCACAGGA CTTGCCCGCA
GAAGTGCGCG GGCATCAAGA AGAGAGCGGC CTGGCTTACC GCAGAACGGA TGACAGCCTG
GAAAAACTCG CCCACGCGCT ACGCGTATTC AACGGCTCGC GCAGCGAACT GGCCAGAGAA
CTGGGGCTGA GCGAACGCAC GTTGTATCGG CGTTTGCGTG CGCTGGGTGT TTCGGGCTGA
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| Protein sequence | MSLIATDLPG SRMQSLVSYL EHDVQPTIVL DTDYNIIAAN TAYQRQFGVE GMPHVGEKCY
RVSHQFAVPC DQAGEHCPMR KADETRRPER LLHIHHTPRG PEHVDVELRP ILDDRGEVIA
YVERLTSVAV ASVQPQQHGL VGRSAAFKDV LSALQRAAPA QIPVLLQGES GTGKELFARA
LHASSSRSAG PLVVVDCTGL TENLLESELF GYEKGAFTGA LQRKTGLAEA AHGGTLFLDE
IGEVPLAMQV KLLRLIESGS FRPVGSLRTV HSDFRLVAAT HKPIKDMVAE GSFRQDLFYR
ISAFPIRLPA LRERSEDLPL LIDSLLQRTS QGAAPRIDAH AMKLLSHYHY PGNIRELRNI
LERARLFTDD GIIRAQDLPA EVRGHQEESG LAYRRTDDSL EKLAHALRVF NGSRSELARE
LGLSERTLYR RLRALGVSG
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