Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0098 |
Symbol | |
ID | 1181706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 118544 |
End bp | 119857 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637391475 |
Product | hypothetical protein |
Protein accession | NP_789957 |
Protein GI | 28867338 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACGCCC GCGTTCAGCA CCTAGCCCGT GACGATCAGC ATGTTGCCTC CTATTACGCC GCCAGCAGCC ACCCGCAAGC GGATCACCCG GCGTTGCAAG GTGAGTTGAA GGTCGATGTG TGTGTCGTGG GTGGCGGGTT TTCCGGGCTT AACACCGCCA TTGAGCTGGC CGAGCGCGGG CTGAGTGTTG CGCTGCTGGA AGCACGCAAG ATCGGCTGGG GGGCGAGCGG GCGTAACGGC GGCCAATTGA TTCGTGGTGT CGGTCATGGC GTCGAGCAGT TTGCCAATGT CATTGGCAGT GAAGGCGTGA GGCAGCTCAA GCTGCTGGGC ATCGAAGCGG TTGAAATCGT GCGCCGGCGC ATCGAACGGT ACGGGATCGA ATGCGACCTG AAGTGGGGTT ATTGCGATCT GGCCAACAAG CCGCGTGATC TGCACAGCCT TGCCAAAGAC GCCGAGGAGT TGCGCAGCCT GGGTTATCGA CATGAGTTGA CGTTGCTGCA AGCCGATCAG ATGCGCACTG TCGTGGGCTC CGACCGCTAT GTCGGCGGGT TGATCGACCT GGGTTCCGGG CATCTGCACC CGTTGAATCT CGCGCTGGGC GAAGCCGCCG TCGCGCAATC TCTGGGCGTG CAAGTGTTTG AGCATTCTGC TGTCACGCGC ATCGACTACG GTCCGCAGGT CAAGGTGCAC ACGGCTCAGG GCTCGGTGCT TGCGAAAACC CTGGTGCTGG GTTGCAACGC TTATCTCGAC GAGCTGAACC CGGAAATCAG CGGCAAGGTG TTGCCCGCAG GCAGCTACAT CATTGCGACC GAGCCTTTGA GTGAGGCGCA GGCACGCGAG TTGCTGCCGC AGGACATGGC TGTTTGCGAC CAGCGGGTAA CGGTTGATTA CTATCGGTTG TCTGCTGACC GCCGCTTGTT GTTCGGCGGT GCCTGCCATT ATTCGGGGCG CGATCCGCAG GATATCGCCG CTTACATGCG CCCCAAAATG CTGGATGTAT TTCCGCAACT GGCCAGCGTG GCCATTGATT ATCAGTGGGG CGGGATGATC GGGATCGGTG CCAACCGCTT GCCGCAGATT GGCCGACTCA GCCAGCAGCC AAACGTGTTT TACGCCCAGG CTTACTCGGG GCATGGCGTG AATGCCACGC ACCTGGCGGG TCGCTTGCTG GCCGAAGCCA TCGCCGGGCA ACACAGCGAC GGCTTCGAAC TGTTTGCCAG GGTGCCGCAC ATGACCTTTC CGGGCGGCAA ACACCTGCGC TCGCCGTTAC TGGCGCTGGG CATGCTCTGG CATCGCCTGA AAGAGCTGCG CTGA
|
Protein sequence | MNARVQHLAR DDQHVASYYA ASSHPQADHP ALQGELKVDV CVVGGGFSGL NTAIELAERG LSVALLEARK IGWGASGRNG GQLIRGVGHG VEQFANVIGS EGVRQLKLLG IEAVEIVRRR IERYGIECDL KWGYCDLANK PRDLHSLAKD AEELRSLGYR HELTLLQADQ MRTVVGSDRY VGGLIDLGSG HLHPLNLALG EAAVAQSLGV QVFEHSAVTR IDYGPQVKVH TAQGSVLAKT LVLGCNAYLD ELNPEISGKV LPAGSYIIAT EPLSEAQARE LLPQDMAVCD QRVTVDYYRL SADRRLLFGG ACHYSGRDPQ DIAAYMRPKM LDVFPQLASV AIDYQWGGMI GIGANRLPQI GRLSQQPNVF YAQAYSGHGV NATHLAGRLL AEAIAGQHSD GFELFARVPH MTFPGGKHLR SPLLALGMLW HRLKELR
|
| |