Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0086 |
Symbol | radC |
ID | 1181694 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 108181 |
End bp | 108855 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391463 |
Product | DNA repair protein RadC |
Protein accession | NP_789945 |
Protein GI | 28867326 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2003] DNA repair proteins |
TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATTC GCAGTTGGCC CGCGGCCGAA CGCCCGCGGG AACGCTTGTT GGAGCTGGGA GCGGCGAGCC TTTCGGACGC CGAATTGCTG GCGATCTTTT TACGCACCGG CGTGGCCGGA AAAAGCGCTG TAGACCTGGC GCGTCACCTC TTGAATCAAT TCGACGGGCT CAGATCGTTA CTGGATGCTG ATCAGCCCGC TTTCACCGCT CAACTGGGGC TGGGACCGGC AAAATTCGCT CAGTTACAGG CCGTCATGGA GATGGCGCGC CGGCACATGG CCGAGTCATT GCGCCGCGAT TCAGCGCTGG AAAACCCGGC CCAGGTGCGT AACTACCTCA AGGCCCAGCT TCGACACGAA CCGCATGAAG TCTTCGCCTG CCTGTTTCTC GATAACAAAC ACCGGGTCAT GACCTTCGAG ATCCTGTTTC GCGGGACGAT CAATGCATCC TACGTGCACC CACGTCAGGT AGTGAAGCGG GCGCTGGCGC ACAACGCCGC CAGCCTGATC CTCTGCCACA ACCATCCCTC GGGCATTACA ACGCCCAGCC GCTCCGACAT CGACCTGACC AAGCGCCTCA AAGAAGCCCT GAAGCTGGTG GATGTTCATG TGCTTGACCA TGTGATCGTA GGTGACGGCG AGCCGTTGTC GATGGTGGAG AAGGGATTGA TGTAG
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Protein sequence | MSIRSWPAAE RPRERLLELG AASLSDAELL AIFLRTGVAG KSAVDLARHL LNQFDGLRSL LDADQPAFTA QLGLGPAKFA QLQAVMEMAR RHMAESLRRD SALENPAQVR NYLKAQLRHE PHEVFACLFL DNKHRVMTFE ILFRGTINAS YVHPRQVVKR ALAHNAASLI LCHNHPSGIT TPSRSDIDLT KRLKEALKLV DVHVLDHVIV GDGEPLSMVE KGLM
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