Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0073 |
Symbol | spoT |
ID | 1181681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 94805 |
End bp | 96910 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391450 |
Product | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase |
Protein accession | NP_789932 |
Protein GI | 28867313 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.977893 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCGAGCA TAGACGCCCT CGCCGACAGA CTGTCGGCCT ACCTCGGTAA GGACCAGGTC AATCTGGTCC GCCGAGCGTA TTTCTACGCC GAACAAGCCC ACGATGGCCA GCGCCGTCGC AGCGGTGAAG CCTACGTCAC CCATCCTCTT GCGGTAGCCA ATATCCTTGC TGACATGCAC ATGGACCATC AGAGCCTGAT GGCTGCGATG CTGCATGACG TCATCGAAGA CACCGGTATT GCCAAGGAAG CGCTCAGCGC GCAGTTTGGC GAAACCGTCG CGGAACTGGT CGACGGGGTC AGCAAACTGA CCCAGATGAA CTTCGAGACC AAAGCCGAAG CTCAGGCCGA AAACTTCCAG AAAATGGCCA TGGCGATGGC GCGGGACATC CGCGTGATTC TGGTCAAGCT CGCCGACCGC CTGCACAACA TGCGCACACT GGAAGTCCTG TCCGGTGAAA AGCGCCGCCG CATCGCCAAG GAAACCCTCG AAATCTATGC CCCCATCGCC AATCGGCTGG GCATGCACAG TGTGCGCATC GAATTTGAAG ACCTGGGTTT CAAGGCCATG TACCCGATGC GCTCCTCGCG AATCAACCAG GCGGTCAAGC GCGCCAGGGG CAATCGCAAG GAGCTGGTCA ACAAGATCGA AGAGTCCCTG AGCCATTGCC TTGCGGTGGA TGGCATCGAA GGCGACGTCA GCGGGCGGCA GAAACACCTC TACGGCATCT ACAAGAAGAT GCGCGGCAAG CGCCGGGCCT TCAACGAGAT CATGGACGTT TACGCGTTCC GCATCATCGT CGACAAGGTC GATACCTGTT ATCGCGTGCT GGGCGCTGTA CATAATCTGT ACAAGCCGCT GCCCGGCCGA TTCAAGGATT ACATCGCGAT CCCCAAGGCC AACGGCTACC AGTCGTTGCA TACCACGCTG TTCGGCATGC ACGGCGTACC GATCGAAATC CAGATTCGCA CACGCGAAAT GGAAGAGATG GCCAATAACG GCATCGCTGC GCACTGGCTG TACAAATCCA GTGATGACGA GCAGCCCAAG GGCACTCACG CCCGCGCCCG GCAGTGGGTC AAGGGCGTGC TGGAAATGCA GCAGCGCGCG GGCAACTCCC TGGAGTTCAT CGAGAGCGTC AAGATCGACC TGTTCCCGGA CGAGGTCTAC GTTTTCACGC CCAAGGGCCG GATCATGGAG CTGCCCAAAG GCTCCACGGC AGTGGATTTT GCCTATGCAG TGCATACCGA TGTCGGCAAC AGCTGCATTG CCTGTCGCAT CAACCGTCGA CTGGCGCCAT TGTCCGAGCC GCTGCAGAGC GGCTCCACGG TCGAGATTGT CAGCGCCCCC GGCGCACGTC CGAACCCGGC ATGGCTGAAC TTCGTCGTCA CCGGCAAGGC ACGTACCCAT ATTCGCCACG CGCTCAAGCT GCAACGCCGC TCCGAGTCGA TCAACCTTGG CGAGCGCCTG CTCAACAAGG TGCTTAACGG CTTTGAATGC AGCCTGGACA AGGTCACGCC AGAGCGCATT CAACTGGTGC TGAATGAATA TCGGGTCGAG GTGCTGGAAG ACCTGCTCGA AGACATCGGC CTGGGCAATC GCATGGCCTA TGTCGTCGCC CGCCGCTTGC TGGGCGAAGG CGAGCAACTG CCAAGCCCGG AAGGCCCGCT GGCGATTCGC GGCACCGAAG GTCTGGTACT CAGCTACGCC AAATGCTGTA CGCCGATCCC GGGCGACCCG ATTGTCGGCC ATTTGTCTGC GGGCAAGGGC ATGGTCGTGC ACCTGGATAA CTGCCGTAAT ATCAGCGAAA TCCGCCACAA CCCGGAAAAA TGCATCCAGC TTTCCTGGGC CAAGGACGTC ACCGGCGAAT TCAATGTCGA GCTGCGTGTC GAGCTAGAGC ACCAGCGCGG TCTGATCGCC TTGCTGGCCA GCAGCGTCAA CGCAGCCGAT GGCAATATCG AAAAAATCAG TATGGACGAA CGCGATGGTC GCATCAGCGT GGTCCAACTG GTGGTCAGTG TGCACGACCG CGTGCACCTG GCCCGCGTGA TCAAGAAACT GCGCGCCTTG ACCGGTGTCA CACGCATCAC CCGGATGCGC GCGTAG
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Protein sequence | MPSIDALADR LSAYLGKDQV NLVRRAYFYA EQAHDGQRRR SGEAYVTHPL AVANILADMH MDHQSLMAAM LHDVIEDTGI AKEALSAQFG ETVAELVDGV SKLTQMNFET KAEAQAENFQ KMAMAMARDI RVILVKLADR LHNMRTLEVL SGEKRRRIAK ETLEIYAPIA NRLGMHSVRI EFEDLGFKAM YPMRSSRINQ AVKRARGNRK ELVNKIEESL SHCLAVDGIE GDVSGRQKHL YGIYKKMRGK RRAFNEIMDV YAFRIIVDKV DTCYRVLGAV HNLYKPLPGR FKDYIAIPKA NGYQSLHTTL FGMHGVPIEI QIRTREMEEM ANNGIAAHWL YKSSDDEQPK GTHARARQWV KGVLEMQQRA GNSLEFIESV KIDLFPDEVY VFTPKGRIME LPKGSTAVDF AYAVHTDVGN SCIACRINRR LAPLSEPLQS GSTVEIVSAP GARPNPAWLN FVVTGKARTH IRHALKLQRR SESINLGERL LNKVLNGFEC SLDKVTPERI QLVLNEYRVE VLEDLLEDIG LGNRMAYVVA RRLLGEGEQL PSPEGPLAIR GTEGLVLSYA KCCTPIPGDP IVGHLSAGKG MVVHLDNCRN ISEIRHNPEK CIQLSWAKDV TGEFNVELRV ELEHQRGLIA LLASSVNAAD GNIEKISMDE RDGRISVVQL VVSVHDRVHL ARVIKKLRAL TGVTRITRMR A
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