| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0030 |
|---|
| Symbol | |
|---|
| ID | 1181638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 36881 |
|---|
| End bp | 38767 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637391409 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_789891 |
|---|
| Protein GI | 28867272 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTT TCCAAAATGT GGCCCTCCAA TCAGGTGAAA GCCTGAACTC TCTTTTGATG
CGAAAAGCGG AGCTCAACGG CTATGGTTGC GCTCAGGCGC TGTTGGGCGA ACGAGGGCTC
AAGTTAGCAG CCGCTTACTC GTCGCCAGAG CTCGCTCAAA TCTGCGAATG TTTTGAGCTG
AAAGAGGAAC AGCTCAGTAC AACTCTCATT GGCCAAACGC ATTACCTTGG TCAACCCAGC
TACCTTCGCA ATGGCCATTC ACCGGTCTGT CCAGAGTGCT TGGCCTCCGA TGGATATGCT
AAAGAGGCTT GGTCTCATCT GCTGGTCACA GCTTGTCCCA CCCATGGCAT TGTGCTGCTT
GGCAACTGCC CCGACTGCGA GAAACCGATC AGTTACCACC GACGCACGCT GGAGCTTTGT
GACTGCGGGT ACGATCTACG GCTTGCTGTT AGCGCCCAAG CGTCAGAGTT CGCAATGAAA
TTATCCGCAC TGATGGCTGA TGCGGGTGTC GGCGAGCACA AAGGGTTTAC CGAGATTTGC
CGCCGTCAGG GATTCGAACC GCTGTTGCCT GACTTCTTAA CGCTACTCGC GAAGCACCAA
GCTCAACGAA GCGGTTTGCC GATGGCTAAA CCTCGCTTCA GCAGTTCTTC ACCTTTGCAA
GATTCGCTGG TGATGGTGGG TTGTTTGGAG TCGTTGCTGA GTGATTGGCC AGCACGTTTT
GATGCGGCCA TGCAAAACCA ACTTCGCTCA GGCCATGGCG TTGGTCTCGC CGAACGGATT
GGATCTTGGT ACAGGGAGTT ATTCAGCACC TACTCATCCT CCAGCTTTGA TTTCGTTCGA
GATCAGTTCA GGGCACAAGT GGCTGAACAC TTTGACGGGC GCTTAGGGCT CAATACGCGC
GCGATGATGT TTGGGCCTGA TAACGCTGAA GCGATGCAGT GGTTCTCAGC GGCAGAGGCT
GCGCGCTTGT TAGGAGTTGC TCCAGATATT CTGGCCAACC TAGTGATCAA GCAAGCTGTG
ATCGGGAGGG TTCACCAGGA AGGTAAGAGT CGCTTTGTCG CCATTCACCG CTCTATGCTT
GATCAGATCG CATCAGCACG TGCTGAATAC CTTTCCGCAA CCGAGGCTCG CCGTCGACTG
AACGTCTCAA AAATATTTTT TGAGCGTTTC GTGCAAGCCG GAGGCCTCCG CCGGTACAAA
CGTGATGAGC GGCCTGTGTT AGTCGCGGGC GAATTTTTAG CTACCGAGAT TGACGCAGTT
GTTGCTCAGT TGATTAAACG GGTGCGTAAG AAAGCTCGGG TTTCTCTCCC CATCGGAATT
CAGGACATTT CGGTAAGACA CGGCATATCC AATGCCAAGA TTGTCGCGGT GCTCCAGGAC
ATTTTGCAGG GAACGATCTG CCCGACGGGG CATGTGCCAG CTCTCCCTGG ACTGGCAGGC
TTACAGTTCG ATCAGGCCGA AATCGAACAG CGTGTTCGAG ACAACAATCC GGACGTCGCG
CTCAGCGTAG ACCACTTGGC CCAGATATCA GGGTGGAAAC CTGCAGTGAT CAAGAAATGG
ATTCAGGGCG GATACCTTAA TGCTGTCGAA GAGAAACATG GCAAAGCTAA GCGAGATGTA
GTGCCTGTAT CCGCGCTTGT TCGTTTTCTT CTGACATACG TTCCAACTGC TGAGATCTCC
AAGCAGCTTG AGACCAAAAC GCCCTATTTG CTCCAGTCCC TCCGGCCCGC GAAGATCGAA
TGCATTGTTC CGCCTCAGGA AGCAGGAGGA GCTCATCGTG GCCTGTTATT GCGGAGTGCT
GACTTGGCAC GCGGAGCTCA ACTGCGTAAG CCCACTATCC GAGATTTGGC TAATCAAATG
GCCCAGGTGG ATTTTATCCA GTGTTAG
|
|---|
| Protein sequence | MSFFQNVALQ SGESLNSLLM RKAELNGYGC AQALLGERGL KLAAAYSSPE LAQICECFEL
KEEQLSTTLI GQTHYLGQPS YLRNGHSPVC PECLASDGYA KEAWSHLLVT ACPTHGIVLL
GNCPDCEKPI SYHRRTLELC DCGYDLRLAV SAQASEFAMK LSALMADAGV GEHKGFTEIC
RRQGFEPLLP DFLTLLAKHQ AQRSGLPMAK PRFSSSSPLQ DSLVMVGCLE SLLSDWPARF
DAAMQNQLRS GHGVGLAERI GSWYRELFST YSSSSFDFVR DQFRAQVAEH FDGRLGLNTR
AMMFGPDNAE AMQWFSAAEA ARLLGVAPDI LANLVIKQAV IGRVHQEGKS RFVAIHRSML
DQIASARAEY LSATEARRRL NVSKIFFERF VQAGGLRRYK RDERPVLVAG EFLATEIDAV
VAQLIKRVRK KARVSLPIGI QDISVRHGIS NAKIVAVLQD ILQGTICPTG HVPALPGLAG
LQFDQAEIEQ RVRDNNPDVA LSVDHLAQIS GWKPAVIKKW IQGGYLNAVE EKHGKAKRDV
VPVSALVRFL LTYVPTAEIS KQLETKTPYL LQSLRPAKIE CIVPPQEAGG AHRGLLLRSA
DLARGAQLRK PTIRDLANQM AQVDFIQC
|
|---|
| |