Gene PSPTO_0028 details

Gene Information

• Locus tag: PSPTO_0028
• ID: 1181636
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 33978
• End bp: 35933
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637391407
• Product: transposase
• Protein accession: NP_789889
• Protein GI: 28867270

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.680566
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGCCG TTAATGAAGG GCTCATCAGC TCGCGTCGAT ACAGGGTTGG CGCCGCGCTC 
ATCGGAGCAG ATGGTCGTTC GTATGTAATT GGAACGATCA ATACCAAAGC ACGGCAAGTA 
GTGCTGATTG GGCAGCTAGG TGAATCTCAT GTCTACCAGG ATGACGACTT TCGCAATACA 
GTCGCTTCGG GGGATCTACG CTCGGTCGTG CGTATTGAAA CCCCATGTGG GGTAGAAGAG 
GTTTTTGAAC CTCGATTCTT GAGTCCCACA GAAATTAAAT CTAGAGATGA GCGGCAGGAG 
TACATCAGAG TTGTAGAGCA GCTGATTGAG GATTTTACTT GGAAGGATAT CTACATTGAG 
ATCCAAAGGC GATATGGCTC GCATCGTACT GTACCGTCAA GAAGATCAAT TGAACGATAC 
TGGAGAATTT ATAAAGAGTC ATATTCGCCA AACTGCTTAG CTGCACATTT TTCGGATCGT 
GGGGTTCATC ATTCGTTATC GATGGAACCC GAGGTTCAAG AAATCATTCT TAACGTCATC 
GAGTCAAAGT ATTGCAGTAG CAGTAGGTTT AGCATTCAGG ATATTGTTCA TGCAATTAAT 
ATTCGGTGTT CAGAAAAGTC AGCTGAGATC GGTGTTGAAC TTGGCGGTGT GTCTAGGCGT 
ACGGTAGGCC GATTCATTGC GAGACTAAAT CTGAAAAATA TCAAAGGTCG GCTGAACCCC 
CGCACCTTTC GTTTGATTAT GCGAAATGCG TGTAGCTATC TCGATGTCAA AGAGCCTTAT 
GCCCGCGTAG AGGGTGACTC TACGGTTTTG GACATCTTCA TTGTCGATGC CTCTGGCAAC 
GTAATTGGTT GCCCCACCTT CTATGCTTTG ATCGATACAG CAACAATGAC CATTGTTGGA 
ATTCACCTCA CCATTCAGGC AGCAAGCCAG GTCGGGTTGA TGCAATCCCT GCAGTTTGCT 
TTTAGCCCCA AGGGAGAGCC ATTTAAAACG CAATGGAGCT GTATGCATGA GTGGCCCGCC 
CCGGCAGATA TCCGCACATT GGTTCTGGAT AACGGATCTG ATTGCCATGG CCCTATGATC 
GTTAAAGCGT CGCAACACCT GGGTATGATG TTGGAGTACT GTGTTGCCGG TGCCCCCTAC 
CAGAAACCGT TTATTGAGCG TTTTTTTGGC ACGTTGAACA CGATGCTGAT CAAGAAACTG 
CCAGGCGCTA AGAAATCACA TGACAAGCGG GAAACGCATG GTCTGGAAGA CGCACAAAAA 
TCTGCGACCT TGACCATCGA AAAACTTAAC GAAGTCATCA TCCGCTGGAT TACGGATTCA 
TATCATATTA AGAAGAGTGA TCGCTTGTCC GAAAAGTTTG GTCAGGAGTT TACTCCATTG 
CAGGCGTTGA CTCGTCTGAG CCAGCAGTAT GTAGTTTTTC CAGCCCCTTC GGCTGAAGAA 
TTGATGGAAG CCTGTCGTCA TTACTTAGAA GTCAAGTTAA GTATCACTCG TGAAGGTATT 
AACTATCAGC GCCAGTTCTA TCAGAACGAG TATGTTTCAG CGCTTTTCAA AACAAACTCT 
ACGGTGAAGG TAGATGTGTG CATTAATCCA CTTGACTGCC GGTCGGTTCA TATTTATGAC 
CTTGGCTTGA AAGAGTGGGT CACGGTTCAA AATAAGAACC CGAACATGCC TGCTATTAGT 
TTTGAACAGG CTAAGGAAAT CCGGAAGGCA CATTATAAGT CAGACTTCGA GTTGTCTGGG 
GAAGATTACG TCATCAATCA TATAAATATT ATCGAAGATG CCAATGCGCA GAAACGTCCA 
AAAGGCAAGA TTCGCGAGAA TCAAAGAGCT CAACGAACAG TCGATAAAGC CAACGCTGCG 
GCGATCACTC CTGAACAACA ATTGCCGATT GCTGAAACCG TTCTCGCTGC TGCTCCGACA 
GAAATCGTAG TTGCGCCCCA CCGGAGGAAA AAATGA 

 

Protein sequence

MAAVNEGLIS SRRYRVGAAL IGADGRSYVI GTINTKARQV VLIGQLGESH VYQDDDFRNT 
VASGDLRSVV RIETPCGVEE VFEPRFLSPT EIKSRDERQE YIRVVEQLIE DFTWKDIYIE 
IQRRYGSHRT VPSRRSIERY WRIYKESYSP NCLAAHFSDR GVHHSLSMEP EVQEIILNVI 
ESKYCSSSRF SIQDIVHAIN IRCSEKSAEI GVELGGVSRR TVGRFIARLN LKNIKGRLNP 
RTFRLIMRNA CSYLDVKEPY ARVEGDSTVL DIFIVDASGN VIGCPTFYAL IDTATMTIVG 
IHLTIQAASQ VGLMQSLQFA FSPKGEPFKT QWSCMHEWPA PADIRTLVLD NGSDCHGPMI 
VKASQHLGMM LEYCVAGAPY QKPFIERFFG TLNTMLIKKL PGAKKSHDKR ETHGLEDAQK 
SATLTIEKLN EVIIRWITDS YHIKKSDRLS EKFGQEFTPL QALTRLSQQY VVFPAPSAEE 
LMEACRHYLE VKLSITREGI NYQRQFYQNE YVSALFKTNS TVKVDVCINP LDCRSVHIYD 
LGLKEWVTVQ NKNPNMPAIS FEQAKEIRKA HYKSDFELSG EDYVINHINI IEDANAQKRP 
KGKIRENQRA QRTVDKANAA AITPEQQLPI AETVLAAAPT EIVVAPHRRK K