Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0004 |
Symbol | gyrB |
ID | 1181612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4147 |
End bp | 6564 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637391384 |
Product | DNA gyrase, subunit B |
Protein accession | NP_789866 |
Protein GI | 28867247 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAA ACCAAACGTA CGACTCGTCC AGCATTAAAG TGCTGAAAGG ACTTGATGCC GTACGCAAGC GTCCCGGAAT GTACATCGGT GATACAGACG ATGGCAGCGG TCTGCACCAT ATGGTGTTCG AGGTGGTTGA TAACTCGATC GACGAAGCAT TGGCAGGCCA TTGCGACGAC ATCAGCATCA TCATCCATCC AGACGAATCT ATCACCGTGC GCGACAACGG CCGCGGTATT CCGGTAGACG TGCATAAAGA AGAAGGCGTG TCGGCAGCCG AAGTCATCAT GACCGTGCTC CACGCGGGTG GTAAGTTCGA TGACAACTCC TACAAAGTAT CCGGCGGTTT GCACGGTGTA GGTGTTTCCG TGGTCAACGC CCTTTCAGAA CTTCTGTTGC TGACAGTGCG TCGCAGCGGC AAGATCTGGG AACAGACCTA CATTCACGGT GTTCCACAAG AACCGATGAA AATCGTCGGC GAAAGCGACA GCACCGGCAC CCAGATTCAC TTCAAGCCAT CTGCTGAGAC CTTCAAGAAT ATCCACTTCA GCTGGGACAT TCTGGCCAAG CGGATCCGTG AACTGTCGTT CCTGAACTCC GGTGTTGGCA TCGTCCTCAA GGACGAGCGT AGCGGCAAGG AAGAACTGTT CAAGTACGAA GGCGGTTTGC GTGCGTTCGT TGAATACCTG AACACCAACA AGACGCCGGT CAACGAAGTG TTCCACTTCA ATGTCCAGCG CGATGACGGT ATTGGCGTCG AGATTGCCCT GCAGTGGAAC GACAGCTTCA ACGAGAACCT GTTGTGCTTC ACCAACAACA TTCCACAGCG CGATGGCGGC ACTCACCTGG TGGGGTTCCG ATCCGCACTG ACGCGTAACC TGAACAACTA CATCGAGCAG GAAGGTCTGG CCAAGAAGCA CAAGGTCGCG ACCACCGGTG ACGATGCGCG TGAAGGTCTG ACTGCAATTA TCTCGGTCAA AGTACCTGAT CCGAAGTTCA GCTCGCAGAC CAAAGACAAG CTGGTTTCGT CCGAAGTCAA AACTGCAGTC GAACAGGAAA TGGGCAAGTA CTTCTCCGAC TTCCTGCTGG AAAACCCGAA CGAAGCCAAA GCCGTCGTCG GCAAGATGAT CGACGCAGCC CGTGCCCGTG AAGCCGCGCG CAAGGCCCGT GAGATGACTC GCCGTAAAGG CGCGCTGGAC ATCGCCGGCT TGCCAGGCAA ACTGGCTGAC TGCCAGGAAA AAGACCCTGC CCTCTCCGAA CTGTACCTGG TGGAAGGGGA CTCTGCTGGC GGATCAGCCA AGCAGGGACG TAACCGTAGA ACCCAGGCCA TCCTGCCTCT TAAGGGCAAG ATTCTGAACG TTGAAAAAGC ACGCTTCGAC AAGATGATCT CTTCTCAGGA AGTGGGCACC TTGATCACCG CGCTGGGCTG TGGCATTGGC CGCGAAGAGT ACAACATCGA CAAGTTGCGC TATCACAACA TCATCATCAT GACCGATGCT GACGTCGACG GCTCGCACAT CCGCACCCTG CTGCTGACCT TCTTCTTCCG TCAGTTGCCG GAGCTAATCG AGCGTGGCTA CATATACATC GCTCAGCCGC CGCTGTACAA GGTCAAGAAA GGCAAGCAGG AGCAGTACAT CAAGGACGAC GAGGCCATGG AAGAATACAT GACCCAATCG GCCCTTGAAG ACGCCAGTCT GCACCTCAGC GAGTCTGCAC CGGGTATCTC GGGCACCGCG CTGGAGAAAC TGGTTCACGA CTTCCGCATG GTCATGAAAA CCCTCAAGCG CCTCTCGCGT CTGTACCCAC AGGAATTGAC CGAGCACTTC GTCTACCTGC CGCCAATCAC CCTGGAGCAG CTATCCGACC ACGAGGGCAT GCAAGCCTGG CTGGCACTGT TCGACGTGCG TCTGCGCACT GGCGAGAAGT CGGGTCTGGT CTACAAAGCC AGCCTGCGCG AAGACCGTGA GCGTAACGTC TGGCTGCCAG AGGTCGAACT GATCTCCCAC GGCCTGTCGA ATTACATCAC CTTCAACCGC GACTTCTTCG GCAGCAACGA CTACAAGACC GTCACGGCCC TGGGCGCGCA GATAAGCACG CTGCTGGAAG AAGGCGCGTA CGTGCAACGT GGCGAGCGCA AAAAGCCCGT CACCGAGTTC AAACAAGCCC TCGCCTGGCT GATGGCTGAA AGCACCAAGC GTCATACCAT CCAGCGCTAC AAAGGACTGG GTGAAATGAA CCCGGATCAG CTCTGGGAAA CCACTATGGA CCCAAGCGTG CGTCGCATGC TCAAAGTCAC TATCGAAGAC GCCATTGGCG CTGACCAGAT CTTCAACACC CTGATGGGTG ATGCGGTCGA ACCACGCCGT GACTTCATCG AGAGCAATGC GCTGGCGGTG TCCAACCTGG ACTTCTGA
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Protein sequence | MSENQTYDSS SIKVLKGLDA VRKRPGMYIG DTDDGSGLHH MVFEVVDNSI DEALAGHCDD ISIIIHPDES ITVRDNGRGI PVDVHKEEGV SAAEVIMTVL HAGGKFDDNS YKVSGGLHGV GVSVVNALSE LLLLTVRRSG KIWEQTYIHG VPQEPMKIVG ESDSTGTQIH FKPSAETFKN IHFSWDILAK RIRELSFLNS GVGIVLKDER SGKEELFKYE GGLRAFVEYL NTNKTPVNEV FHFNVQRDDG IGVEIALQWN DSFNENLLCF TNNIPQRDGG THLVGFRSAL TRNLNNYIEQ EGLAKKHKVA TTGDDAREGL TAIISVKVPD PKFSSQTKDK LVSSEVKTAV EQEMGKYFSD FLLENPNEAK AVVGKMIDAA RAREAARKAR EMTRRKGALD IAGLPGKLAD CQEKDPALSE LYLVEGDSAG GSAKQGRNRR TQAILPLKGK ILNVEKARFD KMISSQEVGT LITALGCGIG REEYNIDKLR YHNIIIMTDA DVDGSHIRTL LLTFFFRQLP ELIERGYIYI AQPPLYKVKK GKQEQYIKDD EAMEEYMTQS ALEDASLHLS ESAPGISGTA LEKLVHDFRM VMKTLKRLSR LYPQELTEHF VYLPPITLEQ LSDHEGMQAW LALFDVRLRT GEKSGLVYKA SLREDRERNV WLPEVELISH GLSNYITFNR DFFGSNDYKT VTALGAQIST LLEEGAYVQR GERKKPVTEF KQALAWLMAE STKRHTIQRY KGLGEMNPDQ LWETTMDPSV RRMLKVTIED AIGADQIFNT LMGDAVEPRR DFIESNALAV SNLDF
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