Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0001 |
Symbol | repA |
ID | 1187308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | + |
Start bp | 351 |
End bp | 1664 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637408337 |
Product | replication protein RepA |
Protein accession | NP_808663 |
Protein GI | 29171479 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 52 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACG ACAACGCGAT CAGTCTTGCC CTCGCGACCT CATCCACGGC CAACACCGAT CCGCTGGCCA GCAGCACCCA CCTGCCGCCT GCCCGTTTCT TCGAAGACGG CACTGCGCTC AACCGGTTAT TGCTGGAAGC GCCGTACATG GCGCGGTGCA GTGACGACAA AACCGCGACT CGCGTCCGTC CTCGTGAATA CGCGCTGCGT TATCCCTATA TGCAGGTCAA TCGCCCCGGC ATGGTGTCGT GGCTGGTGTT CGACCTCGAC CATGCCAACG CCTTGGCTTG GGACGATGCC GGGTTGCCCG CGCCGAACCT GATGGTGCGC AACCGCAAAA GCGGCCATTC CCAGTTGTTC TATGCCGTGC CGTCCGTATG CACGACAGAG AATGCACGGG CCAAGCCGAT TCAGTACATG AAGGCGATCT ATGCCGCGTT TGCCGCTCGC CTCGACGCGG ACGTGGACTA CCACGGTGGC CCCGTGGCCA AAACGCCCGG CCACCCTTGG TGGGAGACGA CCGAATTTCA CAGCCACGTG TATGAACTGG GCGAACTGGC GAGCGCGGTG GAGTTGACCG TCAAGCCGTG GGCCACCGGC CCCAAGCTGG ACCAGGTCAG CCATTCGCGG CACTGCATCC TGTTCGAGCA GCTGCGTTAT TTTGCGTACA GCATCGTCAA TCGCGAGCGC GAGCTGGGTT CGTTTGAGTC GTTCATGCGC TCGCTCGATG CGTATGCCTA CAACCACAAC AGCTTTCTAA AACAGGGGTT TTCGGAAAAC CTGCCCCTGT CGTCGATACG CGCCACGGTC AAATCCGTAG GCCGCTGGAC GTGGGATCGG TACACCGGTG ATCGTCGCTG CCATCGAGGC GCAATGCAGC TCGATGGCAG CCTGTCGCTC ACCGAGCGGC AGAGCCTGGC GGCCAGGCGC ACCCATGAAC TACGACACAA AGCCACAGAA TCGAAGATAC GCGCCGCGTG CCGACAGCTT CAAGACCAGG GCAAGGCGCT GGTACGTTCT GCCATTGCAA CACTCGCCGG CGTTTCGGTG AGAACGGTGG CCAGCTACAC GCACATCCTC ACTGAAGTGG CTCAACCGAC CACTGTGAGC GTTCTCAAGG TCAGCCGTAA GGCTGTGCCC ATGCAACCTA AGCAAGATCG CTCACCCGCT ACCCCACCTG TTCGGGCCCC CGTTGGTCAG CCTGCTGATG GCCGCGCTTC GGGTGTGCAA CATGGTGTAC ATCAGATATC TGCGGTCACG CAGGGGCCGC AAGCTGGAGA GCCCTTAAAA ACAGAACATG AGGATGGTTC ATGA
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Protein sequence | MSHDNAISLA LATSSTANTD PLASSTHLPP ARFFEDGTAL NRLLLEAPYM ARCSDDKTAT RVRPREYALR YPYMQVNRPG MVSWLVFDLD HANALAWDDA GLPAPNLMVR NRKSGHSQLF YAVPSVCTTE NARAKPIQYM KAIYAAFAAR LDADVDYHGG PVAKTPGHPW WETTEFHSHV YELGELASAV ELTVKPWATG PKLDQVSHSR HCILFEQLRY FAYSIVNRER ELGSFESFMR SLDAYAYNHN SFLKQGFSEN LPLSSIRATV KSVGRWTWDR YTGDRRCHRG AMQLDGSLSL TERQSLAARR THELRHKATE SKIRAACRQL QDQGKALVRS AIATLAGVSV RTVASYTHIL TEVAQPTTVS VLKVSRKAVP MQPKQDRSPA TPPVRAPVGQ PADGRASGVQ HGVHQISAVT QGPQAGEPLK TEHEDGS
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