Gene PSPA7_6160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPA7_6160 
SymbolbetT1 
ID5354811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa PA7 
KingdomBacteria 
Replicon accessionNC_009656 
Strand
Start bp6365462 
End bp6367066 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content65% 
IMG OID640815204 
Productcholine transporter BetT 
Protein accessionYP_001351471 
Protein GI152987363 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACTG CTTCGCCAAT AAAAACAAAC GAGCAGGTAC GTCTGAACCC GATCGTGTTC 
TTCGGCTCGA CCGCACTGAT CCTGGTTCTG ACCGCCGCCC TCATCCTCTA TCCCGATAGC
GCCGGAGCCT TGCTCGGCCG CATCCAGGCG TGGCTGTCGC ACAGCTTCGG CTGGTACTAC
ATGCTGGCCA TCGGTGCCTA CCTGTTCTTC GTGGTCTGGA TCGCCTTCTC GCGCTTCGGC
ACCCTCAAGC TCGGCGAGGA CCACGAGAAG CCGGACTTCA GCTACGGCGC CTGGGCCGGC
ATGCTGTTCT CCTCCGGGAT CGGCATCTCG CTGCTCTACT TCGCCGCCTC CGAGCCGATC
GACCACCTCT ACCACCCACC CGAAGGCGTT CCCGGCAGCC CTCAGGCGGC GCGCCAGGCG
CTGCAACTGA CCTTCCTCCA CTGGGGCCTG CACGGCTGGG CGATCTATGC CCTGGTCGGC
CTCGCCGTCG GTTACTTCGC CTACCGCCAT CGCCAGCCGC TGGCGTTGCG CTCGGCGCTC
TATCCGATCC TCGGCGAACG CTGGGTGAAA GGTGCCGCGG GCCACGCGGT GGATTGCTTC
GGTATCTTCG TCACCCTCCT CGGGCTGGTG ACCAACCTGG GCATCGGCGC CCTGCAGGTG
TCGTCCGGTC TCGAGTACCT CACCGGCATC CCGCACAGCA AGGGCACCCT GCTGGCGGTG
ATCCTGGTGA TGAGCCTGGT CGCCACCCTG GCGGCGGTGT CCGGCATCGA GAAAGGCATC
CGCCGGCTGT CCAACCTGAA CATCGTGCTG TTCAGCTCGC TGCTGGTGTT CGTGCTGGTC
TGCGGTTCGA CCCTGGAACT GCTCAACGGC TTCGTGCAGA ACCTCGGCGA CTATCTCGAC
GGCCTGGTGC TGAAGACCTT CGACCTCTAC GTCTACACCG GCGCCGGCGC TGGCAAGAGC
GAGGAATGGC TGGGCCTGTG GACCCTGTTC TACTGGGCCT GGTGGATTTC CTGGGCGCCC
TTCGTCGGCA TGTTCATCGC CCGCATCTCC CGGGGCCGCA GCGTACGCGA ACTGGTCTGC
GGGGTACTGC TGATCCCGCT GGGCTTCACC CTGGCCTGGC TGTCGGTATT CGGCAACAGC
GCCCTGGATC TGGTGATGAA CCACGGCGCG ACCGACCTCG GCAAGGCCGC GCTGGAGCAG
CCGTCTATGT CGATCTACCT GCTGCTGGAA CACTATCCGC TGTCGAAGAT CGTCATCGGC
CTGTCGATCT TCGTCGGCTT CGTGCTGTTC CTCACCCCGG CGGATTCCGG CTCGGTGATG
CTGGCCAATC TCTCGCGCAG CGGCGGCGAG TTGGACGAGG ACGCGCCGAA CTGGCTGCGT
ATCCTCTGGT CGGCCGTCGT CACGCTAGTC ACCATCGGCC TGCTGTTCGC CGGCAACTTC
ACGGCGATGC AGACCGTCGT GGTGCTCGCC GGCCTGCCGT TCTCGGCGGT GCTGATCCTG
TTCATGTTCG GCCTGCACAA GGCCATGCGC GCCGACTACG AGGCCCAGGT CGGCGACCGC
CGCACCTACC AGCCGGTGCC GGCGCCAACC CAGCCGCAGA CCTGA
 
Protein sequence
MSTASPIKTN EQVRLNPIVF FGSTALILVL TAALILYPDS AGALLGRIQA WLSHSFGWYY 
MLAIGAYLFF VVWIAFSRFG TLKLGEDHEK PDFSYGAWAG MLFSSGIGIS LLYFAASEPI
DHLYHPPEGV PGSPQAARQA LQLTFLHWGL HGWAIYALVG LAVGYFAYRH RQPLALRSAL
YPILGERWVK GAAGHAVDCF GIFVTLLGLV TNLGIGALQV SSGLEYLTGI PHSKGTLLAV
ILVMSLVATL AAVSGIEKGI RRLSNLNIVL FSSLLVFVLV CGSTLELLNG FVQNLGDYLD
GLVLKTFDLY VYTGAGAGKS EEWLGLWTLF YWAWWISWAP FVGMFIARIS RGRSVRELVC
GVLLIPLGFT LAWLSVFGNS ALDLVMNHGA TDLGKAALEQ PSMSIYLLLE HYPLSKIVIG
LSIFVGFVLF LTPADSGSVM LANLSRSGGE LDEDAPNWLR ILWSAVVTLV TIGLLFAGNF
TAMQTVVVLA GLPFSAVLIL FMFGLHKAMR ADYEAQVGDR RTYQPVPAPT QPQT