Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_6157 |
Symbol | betA |
ID | 5357019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 6361236 |
End bp | 6362921 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640815201 |
Product | choline dehydrogenase |
Protein accession | YP_001351468 |
Protein GI | 152988353 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.103614 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCAGG AATTCGACTA CATCATCATC GGAGCCGGCT CCGCCGGTAA CGTACTCGCT ACCCGCCTCA CCGAAGACGC TGACGTCAGC GTCCTGCTGC TCGAGGCCGG CGGTCCCGAC TACCGCTTCG ATTTCCGCAC CCAGATGCCG GCGGCCCTGG CCTTCCCGCT GCAGGGGCGG CGCTACAACT GGGCCTACGA GACCGACCCC GAGCCCTACA TGAACAACCG TCGCATGGAG TGCGGCCGCG GCAAGGGCCT GGGCGGCTCC TCGCTGATCA ACGGCATGTG CTACATCCGC GGCAATGCCC TGGACTTCGA CGGCTGGGCC AAGGAGCCGG GCCTGGAGGA CTGGAGCTAC CTCGACTGCC TGCCGTACTT CCGCAAGGCG GAAACCCGCG ACATCGGTCC CAACGACTAC CATGGCGGCG ACGGCCCGGT CAGCGTGACC ACGCCGAAGG CCGGCAACAA CCCGCTGTTC CATGCGATGG TCGAGGCCGG CGTGCAGGCC GGCTATCCGC GAACCGAAGA CCTCAACGGC TACCAGCAGG AAGGCTTCGG GCCCATGGAC CGCACCGTGA CCCCGGAGGG CCGTCGCGCT GCCACCGGGC GCGGCTACCT GGACCAGGCC CGCGGCCGGC CCAACCTGAC CATCGTCACC CACGCGCTGA GCGACCGCAT CCTGTTCAGC GGCAAGCGCG CCATTGGCGT CTCCTACCTG GTCGGCAACG GCGACAATCC GGTCACCGCC CACGCCCGTC GCGAAGTGCT GGTATGCAGC GGCGCGATCG CCTCGCCGCA ATTGCTGCAA CGCTCCGGCG TCGGCCCGGC GGCCCTGCTG CGCGACCTGG ACATCCCGGT GGTGCATGAC CTGCCTGGCG TTGGCGCCAA CCTGCAGGAT CACCTGGAAC TCTACCTGCA ATACGCCTGC AAGCAGCCGG TGTCGATCTA CCCGGCGACC AAATGGTGGA ACCAGCCGGC CATCGGCGCC CAGTGGCTGT TCCTCGGCAA GGGTCTCGGC GCCAGCAACC AGTTCGAGGC CGGCGGCTTC ATCCGTACCC GCGAGGCGTT CGAATGGCCG AACATCCAAT TCCATTTCCT CCCGGTGGCG ATCAACTACA ACGGCAGCAA GGGCGTGCAG GAGCATGGCT TCCAGGCGCA CATGGGCTCG ATGCGCTCGC CGAGCCGCGG GCGCATCCAC CTGAAGTCCA GGGACCCGCG CCAGCATCCG AGCATCCTGT TCAACTACAT GTCCCACGAG CAGGACTGGC AGGAGTTCCG CGACGGCATT CGGCTGACCC GCGAGATCAT GAACCAGCCG GCGCTGGATC CCTATCGTGG CCGCGAATTG AGCCCGGGCG TGAACGTGCA GTCGGACGCC GAACTCGACG AGTTCATCCG CAACCATGCG GAGACCGCTT TCCACCCATC CTGCTCGTGC AAGATGGGCA GCGACGACAT GGCGGTGGTC GATGGCCAGG GACGGGTCCA TGGCATGGAA GGGCTGCGAG TGGTGGATGC GTCGATCATG CCGCTGATCA TCACCGGCAA CCTCAACGCC ACCACCATCA TGATGGCCGA GAAGATCGCC GACCGGATCC GCGGTCGCCA ACCACTGCCG CGCAGCACGG CGAAGTATTA CGTGGCCGGG GACGCACCGG TCCGCGGCAA GCCCGTGCGG GCCTGA
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Protein sequence | MSQEFDYIII GAGSAGNVLA TRLTEDADVS VLLLEAGGPD YRFDFRTQMP AALAFPLQGR RYNWAYETDP EPYMNNRRME CGRGKGLGGS SLINGMCYIR GNALDFDGWA KEPGLEDWSY LDCLPYFRKA ETRDIGPNDY HGGDGPVSVT TPKAGNNPLF HAMVEAGVQA GYPRTEDLNG YQQEGFGPMD RTVTPEGRRA ATGRGYLDQA RGRPNLTIVT HALSDRILFS GKRAIGVSYL VGNGDNPVTA HARREVLVCS GAIASPQLLQ RSGVGPAALL RDLDIPVVHD LPGVGANLQD HLELYLQYAC KQPVSIYPAT KWWNQPAIGA QWLFLGKGLG ASNQFEAGGF IRTREAFEWP NIQFHFLPVA INYNGSKGVQ EHGFQAHMGS MRSPSRGRIH LKSRDPRQHP SILFNYMSHE QDWQEFRDGI RLTREIMNQP ALDPYRGREL SPGVNVQSDA ELDEFIRNHA ETAFHPSCSC KMGSDDMAVV DGQGRVHGME GLRVVDASIM PLIITGNLNA TTIMMAEKIA DRIRGRQPLP RSTAKYYVAG DAPVRGKPVR A
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