Gene PSPA7_6064 details

Gene Information

• Locus tag: PSPA7_6064
• ID: 5358242
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 6268050
• End bp: 6270035
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640815108
• Product: putative choline transporter
• Protein accession: YP_001351380
• Protein GI: 152986479
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGACAC CCACCGCACC CCGGAGCACC CTGAACCCTC CGGTTTTCTT TACCTCCGCC 
GCCCTGATCC TGGCCCTGGT GCTGTTCACC GTCCTGCTCC AGGAAGAAGC GCAATCGCTG 
TTCAACCACG TCCAGCAGTG GATCATCACC AACGCCAGCT GGTTCTACGT CCTCGCCGTG 
GCGCTGATCC TGATCAGCGT GGTGTTCCTC GCCGTGAGTC GCTACGGCGA CATCAAGCTC 
GGCCCCGATC ACAGCCGGCC CGACTACCGC AACACCACCT GGTTCGCCAT GCTGTTTTCC 
GCCGGCATGG GCATCGGCCT GATGTTCTTC GGCGTCGCCG AGCCGGTGAT GCACTTCACC 
ACGCCGCCGG TGGGCGAGCC GAACACCGTG CAGGCGGCGA AGGAAGCGAT GAAGCTGACC 
TTCTTCCACT GGGGCCTGCA TGCCTGGGCG ATCTACGCCA TCGTCGCGCT GATCCTGGCC 
TTCTTCAGCT ACCGCCACGG CCTGCCGCTG ACCCTGCGCT CGGCGCTCTA CCCGTTGATC 
GGCGAACGTA TCTACGGCCC CATCGGCCAT GCGGTGGATA TCTTCGCGAT CATCGGCACC 
GTGTTCGGCG TCGCCACCTC CCTCGGCTAC GGCGTGCTGC AGATCAACAG CGGTTTCCAC 
CACCTGTTCG GCTGGCCGGT GAACCAGACC GTGCAGATCG CGCTGATCGC CGCCACCTGC 
GGCCTCGCCA CCCTCTCGGT GGCCAGCGGC CTGGACCGCG GCATCCGTAT CCTTTCCGAG 
CTGAACCTGA GCCTGGCGGT GGTATTGCTG CTGTTCGTGC TGGTCCTCGG GCCCACCGTG 
TTCCTCCTGC AGACCTACGT GCAGAACACC GGCGCCTACC TGTCGGACAT CGTCAACAAG 
ACCTTCAACC TGTACGCCTA CGAGCCCACC GACTGGATCG GCGGCTGGAC CCTGCTGTAC 
TGGGGCTGGT GGCTGTCCTG GTCGCCCTTC GTCGGCCTGT TCATCGCGCG CATCTCGCGC 
GGCCGGACGA TCCGCGAGTT CGTCTGCGGC GTGCTGTTCG TTCCCGCCGG CTTCACCCTG 
CTGTGGATGA CCGTGTTCGG CGACACCGCG ATCCACATGA TCCTCCAGGA TGGCTTCACC 
CAGCTCGCCG AGGTGGTCAA CCAGGACAGT TCGCTGGCGC TGTTCGCCTT CCTCGAGCAT 
TTCCCGCTGG GCAGCGTCAT CTCGATGATC GCGGTGCTGA TGGTGGTGGT GTTCTTCGTC 
ACCTCGGCCG ACTCCGGCGC CCTGGTGGTG GACATGCTGG CCTCCAGCGG CAAGGACCAC 
TCGCCGCTCT GGCAGCGGAT ATTCTGGTCG GTGCTGATGG GCGTGGTGGC CATCGCCCTG 
CTGCTCGCCG ACGGCCTCAA GGCCCTGCAG ACCGCCACCA TCGCCAGCGC CCTGCCGTTC 
TCCATCGTGC TCCTGGCGTC GATCTGGGGG CTGTTCAAGG CCCTGCACCT GGACGCCACC 
AAGCGCGGCA TCCGCTACCA GGCGCTGACC TTCTCCCGTC CCACCACGCG CGGCGCCGCG 
GGCGAGACGG ACGGTTGGCA GCGGCGCCTG CGCAACATCG CCATGTTCCC GCGGCGCAGC 
CACGTCAACC GCTTCATTTC CGAAGTGGCG CGACCGGCCT GCGAAGACGT CGCCAGCGAA 
CTGCGCAAGC AGGGCTACGA AGTCCAGGTG CAGGATGGCG AGGACGGCCG GGTGCGCCTG 
GAAGTCAGCC ACGGTGGCGA GGTCGACTTC ATCTACGAGG TCCGTCCGCG CGCCTTCACC 
ACGCCGAGCT TCGTGATGCG CGATACCGAG GACAGCAGCG AGGCGCGCAA GTACTTCCGC 
GCCGAGGTCC ACCTGCAGGA GGGCGGCCAG GACTACGACA TCATGGGCTG GAGCCGCGAC 
GGCGTGATCG GCGACATCCT CGACCAGTAC GAGCGGCACA TGCACTTCCT GCACGTGGTG 
CGCTGA 

 

Protein sequence

METPTAPRST LNPPVFFTSA ALILALVLFT VLLQEEAQSL FNHVQQWIIT NASWFYVLAV 
ALILISVVFL AVSRYGDIKL GPDHSRPDYR NTTWFAMLFS AGMGIGLMFF GVAEPVMHFT 
TPPVGEPNTV QAAKEAMKLT FFHWGLHAWA IYAIVALILA FFSYRHGLPL TLRSALYPLI 
GERIYGPIGH AVDIFAIIGT VFGVATSLGY GVLQINSGFH HLFGWPVNQT VQIALIAATC 
GLATLSVASG LDRGIRILSE LNLSLAVVLL LFVLVLGPTV FLLQTYVQNT GAYLSDIVNK 
TFNLYAYEPT DWIGGWTLLY WGWWLSWSPF VGLFIARISR GRTIREFVCG VLFVPAGFTL 
LWMTVFGDTA IHMILQDGFT QLAEVVNQDS SLALFAFLEH FPLGSVISMI AVLMVVVFFV 
TSADSGALVV DMLASSGKDH SPLWQRIFWS VLMGVVAIAL LLADGLKALQ TATIASALPF 
SIVLLASIWG LFKALHLDAT KRGIRYQALT FSRPTTRGAA GETDGWQRRL RNIAMFPRRS 
HVNRFISEVA RPACEDVASE LRKQGYEVQV QDGEDGRVRL EVSHGGEVDF IYEVRPRAFT 
TPSFVMRDTE DSSEARKYFR AEVHLQEGGQ DYDIMGWSRD GVIGDILDQY ERHMHFLHVV 
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