| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5664 |
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| Symbol | rnr |
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| ID | 5354279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 5827886 |
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| End bp | 5830606 |
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| Gene Length | 2721 bp |
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| Protein Length | 906 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640814709 |
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| Product | exoribonuclease RNase R |
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| Protein accession | YP_001350985 |
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| Protein GI | 152986148 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAAAACCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA GTACGAAAAC
CCCATTCCCA GCCGGGAACT GATCCTGGCT CATCTGGCCG AGCGAGGCGC CCCGGCGACC
CGTTCCCAGC TACTCGACGA GTTCGGGCTC GCCGGCGAGG AGCCGGAAGA AGCCCTGCGT
CGACGCCTGC GTGCCATGGA ACGCGACGGG CAGCTTATCT ATACACGTCG CGGTGCCTAT
GCGCCGGTGG ACAAGCTGGA CCTGATCCGC GGCCGCATCA GCGGGCACCG TGACGGCTTC
GGCTTCCTCA TTCCCGACGA TGGCAGCGAC GACCTGTTCC TCAGCCCGAC CCAGATGCGT
CTGGTGTTCG ACGGCGACCG TGCCCTGGCC CGGGTGTCCG GCCACGATCG CCGCGGCCGC
CGCGAAGGCC AGTTGGTCGA GGTGATCGAG CGTGCCCACG AGATCGTGGT CGGCCGCTAC
TTCGAGGAAA GCGGCATCGG CGTGGTGGTC GCGGACAATC CGAAGATCCA GCAGGAAGTC
CTGATCCCGC CGGGCAAGAC TGGCAAGGCC AGGCACAACC AGTTCGTCCA GGTGCGCATC
GAGCAGTGGC CGAGCATCCA TCGCCAGGCT CAGGGCGAGA TTGTCGAGGT GCTCGGCGAC
TACATGGCGC CGGGCATGGA AATCGAGGTC GCCCTGCGCA GCTACGACAT TCCGCACGTG
TGGCCGGCCG CGGTGGAGAA GGAAGCGGCC AGGCTCAAGC CGGAAGTGGC GGAGAAGGAC
AAGCAGAAGC GCATCGACCT GCGTCAGGTG CCGTTCGTCA CCATCGATGG CGAGGACGCC
CGCGACTTCG ACGACGCCGT GTACGCCGAG TCCAGGCGTG GCGGCGGCTG GCGCCTGTTC
GTGGCGATCG CCGACGTCTC GCATTATGTG AAGGTCGGCT CGGCGCTGGA CGAGGAGGCG
GCCAGGCGCG GCAACTCGGT GTACTTCCCC GAGCGGGTGA TCCCGATGCT GCCGGAAGTG
CTGTCCAACG GCCTCTGCTC GCTGAATCCG CTGGTCGACC GCCTGGCCAT GGTCTGCGAG
ATGACCCTGT CCAAGGCCGG CAAGCTCACC GGCTACCAGT TCTACGAAGC GGTGATCCAC
TCCCATGCGC GCCTGACCTA CACCAAGGTC AGCCAGTTGC TCGAGCGTCC CGACAGCGTC
GAGGCCGAGA ACCTGCGCCA GCAGTTGCCC GGGGTGGTGC CGCATCTGCA GCAACTCTAC
GCGCTGTACA AGGCCCTGCT GGCCGGTCGT CACGTGCGCG GCGCGATCGA TTTCGAGACC
CAGGAGACCC GCATCGTCTT CGGCGCCGAC CGGAAGATCT CGGAAATCCG CCCGACCCAG
CGCAACGACG CGCACCGTCT GATCGAGGAA TGCATGCTCT GCGCCAACGT GGCGACCGCG
CGCTTCCTGC AGAAGCACGG CATTCCGTCG CTGTACCGGG TGCACGACGG CCCGCCCCAG
GAGAAACTCA ACAACCTGCG CCAGTTCCTC GGTGAGCTGG GGCTCAGCCT GGGTCGCGGC
AAGGCCGCGC CGACCCCGGG CGACTACCAG GAATTGCTGG AGAAGATCCG CGACCGCGCC
GACTTCCGCC TGATCCAGAC GGTCATGCTG CGTTCGCTCA GCCAGGCGAT GTACAGCCCG
GACAACAATG GCCACTTCGG CCTCAACTAT GACGCCTACA CCCACTTCAC CTCGCCGATC
CGGCGCTACC CCGACCTGCT GGTGCACCGC GCGATCCGCA GCGTGATCCG CTCCAAGGTG
GAGACTCCGC ACGTGCAGCG GGCCGGTGCG GCAAGCATGC CCAAGGCGCG CATCTATCCG
TACGACGAAT TGCGCCTGGA CCAGTTGGGC GAGCAGTGCT CGATGACCGA GCGGCGTGCC
GACGAGGCGA CCCGCGACGT GACCAACTGG CTGAAATGCG AATACATGCG CGAGCGGGTC
GGCGAGACCT TCCCTGGCGT AATCACCGCC GTCACCGGTT TCGGCCTGTT CGTCGAGCTG
ACCGATATCT TCGTCGAAGG TCTGGTGCAT GTGACCGCGT TGCCCGGCGA CTACTATCAT
TTCGACGCCG TGCACCATCG CCTCAGCGGT GAACGCACCG GGCGCAGCTT CCGTCTCGGC
GACACCACGG AAGTGGTAGT GGCGCGGGTC GACCTGGACG AACGGAAGAT CGATTTCGAG
CTGGCCGGGA ACGTGCTGAG CGCGCCGATC GGACGCAAGA AGCGCAATGG CGACAAGTCG
GCGAATGCCG GCAAGGCGCC GAAGGGGCGC AAGGGTGCCT CCGTGCCCGA GGTCGACCTG
GAGCCTGCGC TGGCCAGTCC TGACGCCGCG GTGGTGCCGC GACGCAAGGC CGGCAAGGTG
CAGGCGCTGC CGCCGGTGGC GCCGGAACTG CTGGCCCAGG CCGCGGAGAT GCTCGGCAAC
ACCGACGTAC GCAAGAGTCG CGAAGTGAAG AAGGCTCTGC TCGCCGAGGC GCGTGTCGGC
GACAGCGGCG GCAAGGACAA GGGTGGGAAG AAGGGCAAGG CCGCCCCGGC CGGCAAGAAC
GCCAAGGGCA AGGCCAGGGG CGGCAAGCCT GCTGCCGCCA AGCCGGGGAA ACCGACCAAG
CATCGCAAGG GGCCTTCCAA GCCGAAGGCC GATAGCGCTC CGGCAGCGAC CGGGGCACGC
AAACGTAAGG CCAAGTCATG A
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| Protein sequence | MADWQNLDPE AAREAEKYEN PIPSRELILA HLAERGAPAT RSQLLDEFGL AGEEPEEALR
RRLRAMERDG QLIYTRRGAY APVDKLDLIR GRISGHRDGF GFLIPDDGSD DLFLSPTQMR
LVFDGDRALA RVSGHDRRGR REGQLVEVIE RAHEIVVGRY FEESGIGVVV ADNPKIQQEV
LIPPGKTGKA RHNQFVQVRI EQWPSIHRQA QGEIVEVLGD YMAPGMEIEV ALRSYDIPHV
WPAAVEKEAA RLKPEVAEKD KQKRIDLRQV PFVTIDGEDA RDFDDAVYAE SRRGGGWRLF
VAIADVSHYV KVGSALDEEA ARRGNSVYFP ERVIPMLPEV LSNGLCSLNP LVDRLAMVCE
MTLSKAGKLT GYQFYEAVIH SHARLTYTKV SQLLERPDSV EAENLRQQLP GVVPHLQQLY
ALYKALLAGR HVRGAIDFET QETRIVFGAD RKISEIRPTQ RNDAHRLIEE CMLCANVATA
RFLQKHGIPS LYRVHDGPPQ EKLNNLRQFL GELGLSLGRG KAAPTPGDYQ ELLEKIRDRA
DFRLIQTVML RSLSQAMYSP DNNGHFGLNY DAYTHFTSPI RRYPDLLVHR AIRSVIRSKV
ETPHVQRAGA ASMPKARIYP YDELRLDQLG EQCSMTERRA DEATRDVTNW LKCEYMRERV
GETFPGVITA VTGFGLFVEL TDIFVEGLVH VTALPGDYYH FDAVHHRLSG ERTGRSFRLG
DTTEVVVARV DLDERKIDFE LAGNVLSAPI GRKKRNGDKS ANAGKAPKGR KGASVPEVDL
EPALASPDAA VVPRRKAGKV QALPPVAPEL LAQAAEMLGN TDVRKSREVK KALLAEARVG
DSGGKDKGGK KGKAAPAGKN AKGKARGGKP AAAKPGKPTK HRKGPSKPKA DSAPAATGAR
KRKAKS
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