Gene PSPA7_5656 details

Gene Information

• Locus tag: PSPA7_5656
• ID: 5356825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 5820317
• End bp: 5822206
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 640814701
• Product: GGDEF domain-containing protein
• Protein accession: YP_001350977
• Protein GI: 152988789
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGCCACC CCCTTGCCCT GATCGCGGTC CTCTTCCTGT TGCTGGCGGG CGCCACGTCC 
GGCGCCGCGT CCGGACCGCC CGGCGGCGCC TGGCTGAACG GCTCGCTGGC ACTGCTCGAG 
GACCCCGACG GCAGCCTGCA GGTGGACGAC CTCGAACAGC CGGAGCGGGC CGAGCGCTTC 
GTCGCCGCCC AGGGGCGAAC CAGCGTGGGC CTCAGCCGCA GCGTGTGGTG GCTGCGCCTG 
GACCTGCCGC CGCGCGAGGC GGTGCCCGGA GGCTGGTGGC TGGAAGTCGC CAGCTCCAGC 
CTGCTGGACC TGCGCCTGTA CCTGCCCGAC GGCCAGGGCG GCTACCGCGA GCGGCGCAGC 
GGCGACGCCG TGCCCTTCGC CGAGGGCCGC GACCATGCCT ATCGCCACCC CCTGTTTCGC 
CTGCCCGCCG ACGATGGCCC GCTGCGCGTC TACCTGCGCA GCCACGACCC CGGTGGCAAT 
GCCTTTCCGT TGCGGCTCTG GAGCCACGAC GAGCTGCTGG AATACCGCAG CCAGGGCAAC 
CTGCTGTTCG GCATGGCCTA CGGGCTGATC CTCGCCCTGC TGTTGTACAA CCTGTTCCTT 
TTCAGCAGCC TGCGCGACCG CGCCTGTTTC TGGTACGTGC TGACCGGGGC CAGCGCGCTA 
CTGCTGACCC TGAGCATCAG CGGCCACGGC TTCGAATACT TCTGGCCCGA ACATGCGCTG 
CCCTGGTGGC TGAACCGTCT GACGCTGCTG GCGTTCTGGG GCATCTGCGT GATCCGCTTC 
AGCCAGAACC TGCTGCAGAG CCGCCAGCAC GCCCGCCGGG CCCATCATCT GCTGAACGCC 
TGCTGCCTGC TGTTCCTCGT CTGCCTGGCA CTCAACGCCG GCGGCTGGCG CTGGCAGGCC 
GGCGGGATGC TGGCGGCGAC CCTGCTGGCG AACCTGCCGA TCGCCATCGG CCTGGCCCTG 
CAACGCTGGC GCCAGGGCTC TGCCACCGCA CGCCTGTACC TGCTCGGCTT CGGCCTGGTG 
CTGGGCAGCG TCAGCCTGGA GGTGATGCGC GCCACCGCAC TCGTCCAGCC GACCTCGGCC 
AACGCCATGG TGTTCCCGCT GGCGCTGACC CTGGAGGCCT TGCTGTTCTC CCTCGCGCTC 
GCCTCGCGGA TCCAGGACCT GAAGCAGGAA AGGGCCCAGG CCCTGGAGCA GGCCGACCAG 
GAGAAGAACG CCCGCCTGGC CCTGCTGCAC AGCGCCCAGC GCGACCTGGC GCGCGCCGTG 
GAGGTGCGCA CCAACGAGCT GAGCGAAGCC AACCGCCTGC TGCAGATGCG TGAAGCGCAA 
CTGCAGTATG CCGCCCTGCA CGACCCGCTG ACCGGCCTCG GCAACCGCCG CCAACTGCTG 
GAGTTCGCCG AGCGCGCACT GGAAGACGCC CGTCGCCACG GCGACAGCAT GGCGCTGCTG 
CTGATCGACC TGGACCACTT CAAGCCGATC AACGATACCC ACGGCCACGA CGCCGGTGAT 
TTCGTCCTGC AGAGCGTGGC CCAGCGCCTG CGCCAGTGCG TGCGCGCCGA TGACTGCGTG 
GCGCGCCTGG GCGGCGACGA ATTCGCCGTG TTCATCGGCG GCTCGAACGC CGAACAGCAC 
GCCCGCGAAA TCGCCGAGCG GCTGTTGCGC GAGCTGGCGA AACCGGTGGA GTTCGCCAAG 
CAGTGGCTGG TGATCACACC GAGCATCGGC GTCGCCCTGT TTCCCGGCGA CGCCCTGCAG 
TTCGGCAAAC TCTACAAGGC CGCCGACCAG GCGCTGTACC GGGTCAAGGG CGCCGGCCGG 
GCCGGCTACG CGATGGCCGC CGACGCGCAG CGCGAGACGG CGCCGGCACT GCCCTGGCCG 
TCCGCCCTGG CGCCGGACCG GAGTTCCTGA 

 

Protein sequence

MRHPLALIAV LFLLLAGATS GAASGPPGGA WLNGSLALLE DPDGSLQVDD LEQPERAERF 
VAAQGRTSVG LSRSVWWLRL DLPPREAVPG GWWLEVASSS LLDLRLYLPD GQGGYRERRS 
GDAVPFAEGR DHAYRHPLFR LPADDGPLRV YLRSHDPGGN AFPLRLWSHD ELLEYRSQGN 
LLFGMAYGLI LALLLYNLFL FSSLRDRACF WYVLTGASAL LLTLSISGHG FEYFWPEHAL 
PWWLNRLTLL AFWGICVIRF SQNLLQSRQH ARRAHHLLNA CCLLFLVCLA LNAGGWRWQA 
GGMLAATLLA NLPIAIGLAL QRWRQGSATA RLYLLGFGLV LGSVSLEVMR ATALVQPTSA 
NAMVFPLALT LEALLFSLAL ASRIQDLKQE RAQALEQADQ EKNARLALLH SAQRDLARAV 
EVRTNELSEA NRLLQMREAQ LQYAALHDPL TGLGNRRQLL EFAERALEDA RRHGDSMALL 
LIDLDHFKPI NDTHGHDAGD FVLQSVAQRL RQCVRADDCV ARLGGDEFAV FIGGSNAEQH 
AREIAERLLR ELAKPVEFAK QWLVITPSIG VALFPGDALQ FGKLYKAADQ ALYRVKGAGR 
AGYAMAADAQ RETAPALPWP SALAPDRSS