Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_5183 |
Symbol | rluD |
ID | 5359501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 5329654 |
End bp | 5330616 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640814229 |
Product | pseudouridine synthase |
Protein accession | YP_001350515 |
Protein GI | 152986388 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.521194 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCGATA TGATTCAACG CGCGGCCGAG GTGCCGTTCG AGCTGGGTGG CCAGCGTCTC GACCAGATCG CCGCCCAGCT TTTTCCCGAA CACTCGCGCT CCCGCCTGGC CGGCTGGATC AAGGACGGTC GGCTGACCGT CGATGGCGCC GCGGCGCGCC CGCGCGACAT CGTCCACAGC GGGGCGCAGC TGGTCCTGGA AGCCGAGCAG GAGGCCCAGG GCGAGTGGGT CGCACAGGAT ATCGAGCTGG ATATCGTCCA TGAAGACGAG CATATCCTGG TGATCGACAA GCCTGCCGGT CTGGTGGTCC ACCCGGCTGC CGGCCACCAG GATGGCACCC TGCTCAACGC CTTGCTGTAC CACGTGCCGG GCATCGCCAA CGTGCCGCGT GCGGGCATCG TCCACCGCCT GGACAAGGAC ACCACCGGCC TGATGGTGGT GGCCAAGACC CTGGAGGCCC ATACCAAGCT GGTCGCGCAG TTGCAGGCGC GCTCGGTCAG CCGCATCTAC GAGGCGATCG TGATCGGCGT GATCACTTCC GGCGGCACCA TCGATGCGCC GATCGGCCGG CACGGCGTGC AGCGGCAGAA GATGGCGGTG GTCGATGCCG GCAAGGTGGC TGTGAGCCAT TACCGGGTGC TGGAACGCTT CCGCGCGCAC ACCCACACCC GGGTCAAGCT GGAGACCGGG CGCACCCACC AGATCCGCGT GCACATGAGC CACATCGGCT ATCCGCTGGT CGGCGATCCG GTCTATGGCG GCCGCTTCAA GATCCCGCCG GTGGCCAGCC AGACGCTGGT CCAGACCCTC CGCGAGTTCC CGCGCCAGGC GCTGCACGCG CGCTTCCTCG AACTGGACCA CCCGGCGACG GGCGTACGCA TGAAGTGGGA GTCGCCGCTG CCGGAAGACT TCCTCTGGTT GCTCAGCCTG CTGCGCCAGG ACCGCGAGGC GTTCGTCGGA TGA
|
Protein sequence | MSDMIQRAAE VPFELGGQRL DQIAAQLFPE HSRSRLAGWI KDGRLTVDGA AARPRDIVHS GAQLVLEAEQ EAQGEWVAQD IELDIVHEDE HILVIDKPAG LVVHPAAGHQ DGTLLNALLY HVPGIANVPR AGIVHRLDKD TTGLMVVAKT LEAHTKLVAQ LQARSVSRIY EAIVIGVITS GGTIDAPIGR HGVQRQKMAV VDAGKVAVSH YRVLERFRAH THTRVKLETG RTHQIRVHMS HIGYPLVGDP VYGGRFKIPP VASQTLVQTL REFPRQALHA RFLELDHPAT GVRMKWESPL PEDFLWLLSL LRQDREAFVG
|
| |