| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3645 |
|---|
| Symbol | |
|---|
| ID | 5358737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 3775939 |
|---|
| End bp | 3777468 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640812695 |
|---|
| Product | 3-hydroxy-acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001348999 |
|---|
| Protein GI | 152985009 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.876991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATA TTCGCTGTAT CGCCGTGGTC GGTACCGGTG CGATGGGCAC CGGGATCGCC
CAGATCGCCG CCCAGGCCGG CCTGACCGTG TGGCTGTTCG ACAGCCGCGC CGAGGCCGCC
GCCGAAGCCC GCCAGCGCCT ACGGCAGACC TTCCAGAGCC TGTGCGGCAA AGGCAAGCTG
GGCGCCGCCG ACGCCGAGGC CGCGCAAGAC CGGTTGCGGG TGGCGGAACG CCTGGAACAA
CTGGCCGACT GCGAACTGGT GGTGGAGGCC ATCGTCGAGC GCCTGGAGGC CAAGCAGGAC
CTGCTGCGCC GGCTGGAAGC CATAGTCGCG CCGGAGACCA TCCTCGCCAG CAACACCTCG
TCGCTGTCGA TCACCGCCAT CGCCGCCGCC TGCGAGCGGC CGCAACGGGT CGCCGGCCTG
CACTTCTTCA ACCCCGTGCC GCTGATGCGG GTGGTCGAGG TGGTCGACGG CCTGGCCGGC
GCACCGGAAG TCGGCGACGC CCTGCTCGCC CTCGCCACGC GCCTGGGTCA CCGTGGCGTG
CGGGCCAAGG ATACCCCCGG TTTCATCGTC AACCACGCCG GCCGCGCCTA TGGCACCGAG
GCCCTGCGCA TCCTCGGCGA AGGCGTCGCG GAGTGCGCCG AGATCGACCG CGTGCTGCGC
GAGGGCGCCG GCTTCCGCAT GGGGCCGTTC GAACTGCTCG ATCTCACCGG CCTCGACGTG
TCGCACCCGG TAATGGAGTC GATCTACCGG CAGTACTACC AGGAACCGCG CTACCGCCCG
CACCCGCTGA CCCGCCAGCT GCTCGCCGCC GGCCATCTCG GGCGCAAGAG CGGCCAGGGC
TTCTATCGCT ACGTCGATGG CCAGCCGCAG GACAAGCCCG GCCCGCAGCC GGTGCCGAGG
GTCGCCGCCC TGCCTCCGGT GTGGCTGGGC TGCGAAAGCG AGGCCGACCG CCGTACGCTC
GCCGGACTGC TGCGCCGCCT CGGCGCCGAA CCGGAAACCG GCGAGCGTCC TTCCGCCGCA
GCGCTCTGCC TGTTGGCCGC CTGGGGCGAG GACCTGAGCA GCGCCGTGCA GCGCTTCGCC
TGTCCGGCCG AGCGCAGCGT CGGCATCGAC CTGCTCTGCG ATCTCGAGCG CCGGCGCTGC
CTGATGCTTT CGCCACTGAC CGCCCCGGCC ATGCGCGACG CCGCCCACGC CCTGCTGGCC
AGCGACGGCG TCGGGGTCAC GGTGCTGCGC GACAGTCCCG GCTTCGTCGT CCAGCGGGTC
CTGGCGATGA TCGTCAACCT CGCCTGCGAT ATCGCACAGC AAGGTATTGC CAGTGTCGAA
GACATCGACC AGGCGGTGCA CCTCGGTCTC GGCTATCCCC ACGGCCCGCT GGAGTGGGGC
GACCGTCTCG ACCCGCGGCG CCTGCTGAGC ATTCTCCAGC GCCTGCAGGC GCTCACCGGC
GACCCCCGCT ACCGCCCCAG TCCCTGGCTG CGCCGGCGAG CGCAACTGGG CATGTCCCTG
CGTGCCGGGG AAACCGCCAT CGTAGGCTGA
|
|---|
| Protein sequence | MPDIRCIAVV GTGAMGTGIA QIAAQAGLTV WLFDSRAEAA AEARQRLRQT FQSLCGKGKL
GAADAEAAQD RLRVAERLEQ LADCELVVEA IVERLEAKQD LLRRLEAIVA PETILASNTS
SLSITAIAAA CERPQRVAGL HFFNPVPLMR VVEVVDGLAG APEVGDALLA LATRLGHRGV
RAKDTPGFIV NHAGRAYGTE ALRILGEGVA ECAEIDRVLR EGAGFRMGPF ELLDLTGLDV
SHPVMESIYR QYYQEPRYRP HPLTRQLLAA GHLGRKSGQG FYRYVDGQPQ DKPGPQPVPR
VAALPPVWLG CESEADRRTL AGLLRRLGAE PETGERPSAA ALCLLAAWGE DLSSAVQRFA
CPAERSVGID LLCDLERRRC LMLSPLTAPA MRDAAHALLA SDGVGVTVLR DSPGFVVQRV
LAMIVNLACD IAQQGIASVE DIDQAVHLGL GYPHGPLEWG DRLDPRRLLS ILQRLQALTG
DPRYRPSPWL RRRAQLGMSL RAGETAIVG
|
|---|
| |