Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_3603 |
Symbol | |
ID | 5353600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 3727658 |
End bp | 3731185 |
Gene Length | 3528 bp |
Protein Length | 1175 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640812653 |
Product | hypothetical protein |
Protein accession | YP_001348957 |
Protein GI | 152985576 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.269333 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACT TCTTCAAGAA AGTCGGCGTC TTCCTGCGCA AGACGTGGGT CTGGACGCTG TTGCTGGTAC TCCTGGCGGC ATTGCTGGTG TGGTTCGTCG GGCCGCTGCT GGCGGTCGCC GACTACAAGT TCTGGGAAAG CCCGACCTCG CGGTTGCTGA GCATCAGCCT GATGTTCCTG GTCTGGGGGT TGGCGATGGT CTTCGTCAGC TGGCGCGCCG GAGTGCGGCG CAAGGCCGTC GAGGACAGCG ACGAGGGCCA GGAGCGCCTG CGCCGCGACG GTCTGATCGA AGACGAACAG AAGGAATTGC GCAGCCGCTT CAAGGACGCC TTGCGCACCC TGAAGACCTC CAGCCTGTAC CGCGGCCGCA GCGAGCGCTG GCGCAACGAG CTGCCCTGGT ACCTGCTGAT CGGCCCGCAG GGAAGCGGCA AGACCAGCCT GCTGGACTTT TCCGGACTGG AATTCCCGAT CAACCGGATC GACCGCAAGT TGACCCGTGA CACCGCCGGT ACGCGCTACT GCGACTGGTA CTTCGCCGAC CACGGCGTCC TGATCGACAC CGCCGGGCGC TACCTGACCC AAGCCGACGG CGAGGTCGAC GGGGGCGCCT GGGCGACCCT GCTCGGCCTG TTGCGCAAGC GCCGCCGCGC ACGGCCGCTG AATGGCGTGA TGGTGTCGAT TCCGGTGGAG ACGTTGCTCA GCGACGACGA GATGGCGCTG GATACGCTGG CTCGCCAGGT GCGCGCGCGT CTGCAGGAAA TCCAGCAGAC CCTGCACCTC GATCTGCCGG TCTACCTGGT GCTGAGCAAG GCCGACCAGT TGCTCGGCTT CGACGAGTTC TTCGACCAGT TGAGCCGCGA GGAGAGCGAC CAGGTTCTGG GCACCAGCTT CGGCAAGGAG CAGAACGGCA CCGATGTGAC GGTCCTGCGC CAGGCGTTCG AGGACCTCCT GCGACGCCTG AACAGCCAGG TGATCATGCG CATCCACCAG GAACGCGATA CCCTGCGTCG CGGTCGCATC CTCGACTTTC CGCACCAGCT TGGCCAGATC GGCGAGCGGT TGTGCCTGTT CGTCGAACTC GCCTTCACCG GCAATCGATA CCAGCGCGCC AGCCGCCTGC GCGGCTTCTA CCTGACCAGC GCGCCGCACC TGGCCCAGCA GCTGGACGAG GACACCGCCG GCATCGGCGC CAACCTGGGG ATCGCCAGCG GCCTGCTGCC GACCCTGCGC AACGGGCGCT CGCGCTTCAT CCATCACCTG CTGAGCCAGG TGATCTTCCC CGAGGCCAAC CTGGCAGGTC TCGATCGCCG CGAACGCACG CGCATCCACT GGGGCCAGCG CGCCCTGTAC GTCGGTTCGC TGGCGCTCCT TATGCTATTC GGCCTGCTCT GGGCTGGCGG TTTCTCGGCC AACCACGAGC GCCTGGAGCG GGTGCGCGAG CTGGCGCAGC AATGGACCCA ACAGCGCCAG GCGCTTGGCG AACGCGATGA CGCCATGGCG GCGCTGAAGA CGCTGGATAG CAGCTATGCG GCGACCACCG TGTTTCCGCC CAAAGGGGAA GTCTCGCTGC ACGAGCGCGC CGGGCTGTAC CAGGGCAACG AGGTCAACCC CCCGCTGGCC GCTGCCTATC GCCGCGAGCT GGAGACGCAA CTGCTGCCGC GTGTGGCGCG GATGCTTGAA GCGCAGATCC GCGGCAATCT GCAGAATCGC GAACGCCTGC TCAACAGCCT GCGGGCCTAC CTGATGCTGA ATCTGCGCGA GCGCCGCGAG AACGGATGGC TCAAGGACTG GGTGGCTACC GACTGGTCGC AGCGCTATGC CGGCAACGGC ACCGTGCAGA ATGGCCTGAA CACGCATTTC GCCCGTCTGC TCGAGCAACC GTTCAGCTAT CCGCTGAACG ACACCCTGGT GGCCCAGGCA CGCCAGGTGC TGCGCAGCGA GTCCCTGGCC AACGTGGTCT ACCGGGTGCT GCGCGAACAG GCGCGAAGCC TGCCCGAGTA TCGCTTCGGC CAGCACCTGG GGCCGCAGGC CGGTCTGTTC GTCGGCACCG ACTACGTGAT CCCGGGGTTC TATACCCAGC AGGGCTACCA GCAGTACTTC GTGGTCCAGG GCGCCAGCCT GGTCAACGAT ATCCTTCGCG ACAACTGGGT CCTGGGCGAG GGCAGCGGGA TCAGCGACAT GGACCTGCGG CGCCTGATGG TCGAACTCGA ACAGCTGTAT TTCCGCGACT ACGCGAACTT CTGGAGCGAG GCGGTCGGAC GCCTGGGCCT GCTGCCGTTC AACGATGCCG GCGAGGGTGC CGACCAGATT TCCGGGCTGC TCGCCGCCAA CTCGCCGATC CTCCAGTTGT TGCTGGAGGT CCGTGAGAAC ACCCGTTTCC CGGTCCTGGC GGAGAGCGCC GAGGCGCTGG CAGAGGCTAG CGACAAGGCC ACGGAAAAGG GCGGCAAGCT GGGCAAGGCG GCCGCTGCGG CGGCCGGCAA GGCCAGGGAC GCGTTGGCGA AGAACCTGCC GGATACCGCG AAGAAGTCCC TGCAACGCCG CTTCGAGCCC CTGCATCGCC TGCTCGACGA TAACAACGGC CCGGCGGCCG ACCTCACCCC GCTGTTGCAG GCGCTCAACG AGTTGCAGTT GCAACTCGCC GGACTGGCGC GCGCCAGCCA GCCGGAGCAG GCGGCTTTCG ACATGGCGAA GAGCCGCATG GGCGGCCAGC GCGATGCCCT GAGCAACCTG CGCAACGCCT CCGCGCGACT GCCGCGACCG CTCGGCGGAT GGTTCAGCGT ACTGGCCGAA GACGCCTGGC GGCTGGTCCT CGGCGATGCC TACCTGTACC TCAACCAGCG CTACCAGAGC GAGCTGTACG GTTTCTACAG CAAGGCGATC AACAAGCGCT ACCCGTTCAA CGCGCACAGC GCCAGCGATG TCGCGGTCAG CGATTTTCGC GAGTTCTTCA AGGCGCAGGG CGTCGCCGAA CGCTTCTTCG AAACCTACAT GCGGCCCTTC GTCAGCGGTG ACCCGGGCAG CTACCGCCTG CGCAGCGTGG ACGGCTACAG CCTGCCGATG TCCAAGGTCT ATCTCGACCA GATGGGCACG GCCCTGGTGA TTCGCCAGAG CTTCTTCGCC GAGAACCCGG CCGAGCCGCA GGTGCGCTTC CGCCTGGAGC CCTATACCCT CGATCCTGGC GTCAGCCGCG CCGAGTTCCG TTTCGACGGT CAATCCATGG AATACCGCCA CGGCCCGATC GTGCCGATGT CGTTCAAGTG GCCCAGCGAC GCCGACGGCG GCCGCACCAG CCTGGTGCTG GAGAGGATGG CCGGGCGACC GGTGGGAGTC GAACGCAATA CCGGGCCCTG GTCGCTGTTC AGGCTGTTCG ACCTGATGCA GACCGAGTAC CTCAGCGGGC GTGACGTGAT GGTGCTCAAG GCCGACCTGG GCGGCCTGCG CGCCAACTAC CTGCTGCTCG CCCAGCGCAC GCCGAATCCG TTCGATCTCG CGGTCCTGCG CAGCTTCCGC ATGCCGGTGC AGCTCTGA
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Protein sequence | MKNFFKKVGV FLRKTWVWTL LLVLLAALLV WFVGPLLAVA DYKFWESPTS RLLSISLMFL VWGLAMVFVS WRAGVRRKAV EDSDEGQERL RRDGLIEDEQ KELRSRFKDA LRTLKTSSLY RGRSERWRNE LPWYLLIGPQ GSGKTSLLDF SGLEFPINRI DRKLTRDTAG TRYCDWYFAD HGVLIDTAGR YLTQADGEVD GGAWATLLGL LRKRRRARPL NGVMVSIPVE TLLSDDEMAL DTLARQVRAR LQEIQQTLHL DLPVYLVLSK ADQLLGFDEF FDQLSREESD QVLGTSFGKE QNGTDVTVLR QAFEDLLRRL NSQVIMRIHQ ERDTLRRGRI LDFPHQLGQI GERLCLFVEL AFTGNRYQRA SRLRGFYLTS APHLAQQLDE DTAGIGANLG IASGLLPTLR NGRSRFIHHL LSQVIFPEAN LAGLDRRERT RIHWGQRALY VGSLALLMLF GLLWAGGFSA NHERLERVRE LAQQWTQQRQ ALGERDDAMA ALKTLDSSYA ATTVFPPKGE VSLHERAGLY QGNEVNPPLA AAYRRELETQ LLPRVARMLE AQIRGNLQNR ERLLNSLRAY LMLNLRERRE NGWLKDWVAT DWSQRYAGNG TVQNGLNTHF ARLLEQPFSY PLNDTLVAQA RQVLRSESLA NVVYRVLREQ ARSLPEYRFG QHLGPQAGLF VGTDYVIPGF YTQQGYQQYF VVQGASLVND ILRDNWVLGE GSGISDMDLR RLMVELEQLY FRDYANFWSE AVGRLGLLPF NDAGEGADQI SGLLAANSPI LQLLLEVREN TRFPVLAESA EALAEASDKA TEKGGKLGKA AAAAAGKARD ALAKNLPDTA KKSLQRRFEP LHRLLDDNNG PAADLTPLLQ ALNELQLQLA GLARASQPEQ AAFDMAKSRM GGQRDALSNL RNASARLPRP LGGWFSVLAE DAWRLVLGDA YLYLNQRYQS ELYGFYSKAI NKRYPFNAHS ASDVAVSDFR EFFKAQGVAE RFFETYMRPF VSGDPGSYRL RSVDGYSLPM SKVYLDQMGT ALVIRQSFFA ENPAEPQVRF RLEPYTLDPG VSRAEFRFDG QSMEYRHGPI VPMSFKWPSD ADGGRTSLVL ERMAGRPVGV ERNTGPWSLF RLFDLMQTEY LSGRDVMVLK ADLGGLRANY LLLAQRTPNP FDLAVLRSFR MPVQL
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