Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_2028 |
Symbol | gspD3 |
ID | 5357062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 2067485 |
End bp | 2069461 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640811081 |
Product | general secretion pathway protein D |
Protein accession | YP_001347404 |
Protein GI | 152985006 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.547904 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCAGC CTTTGTTCCG CGCCCTGCTT GCCCCCTCCA GTCGTTCGTA CGTCCCTGCC ATCCTTCTCA GCCTGGCCCT CGGCATCCAG GCCGCGCACG CCGAAGACAG CGGCAGGAAC GCCGTCGCCC CCGCCGGCAA CCAGCAGGAG GCGCACTGGA CGATCAACCT CAAGGATGCC GACATCCGCG AATTCATCGA CCAGATTTCC GAGATCACCG GCGAGACCTT CGTCGTCGAC CCGCGGGTCA AGGGCCAGGT CAGCGTGGTG TCCAAGGCCC AGCTATCGCT GAGCGAGGTC TACCAGCTGT TCCTCTCGGT GATGAGCACC CACGGCTTCA CCGTGGTGGC CCAGGGTGAC CAGGCGCGCA TCGTGCCCAA CGCCGAAGCC AAGACCGAGG CCGGCGGCGG CCAGAGCGCA CCGGACCGCC TGGAGACCCG GGTGATCCAG GTCCAGCAGA GCCCGGTGTC GGAACTGATC CCGCTGATCC GCCCGCTGGT CCCGCAGTAT GGGCACCTCG CCGCGGTGCC CTCGGCCAAC GCGCTGATCA TCAGCGACCG CAGCGCCAAC ATCGCGCGGA TCGAGGACGT GATCCGCCAG CTCGACCAGA AGGGCAGCCA CGACTACAGC GTGATCAACC TGCGCCACGG CTGGGTGATG GACGCCGCCG AGGTACTCAA CAGCGCCATG AGCCGCGGCC AGGCCAAGGG CGCGGCCGGC GCTCAGGTGA TCGCCGACGC GCGCACCAAC CGCCTGATCA TCCTCGGCCC GCCGCAGGCG CGCGCCAAGC TGGTGCAACT GGCGCAGTCG CTGGATACGC CGACCGCGCG CTCGGCCAAT ACCCGGGTGA TCCGCCTGCG CCACAACGAT GCCAAGACCC TGGCGGAAAC GCTCGGGCAG ATTTCCGAAG GCATGAAGAA CAACGGCGGC CAGGGCGGCG AGCAGAGCGG TGGCGGCCGT CCGAGCAATA TCCTGATCCG CGCCGACGAA AGCACCAACG CCCTGGTCCT GCTGGCCGAC CCGGACACCG TCAACGCCCT CGAGGACATC GTCCGCCAGC TCGACGTGCC GCGCGCCCAG GTGCTGGTGG AAGCGGCCAT CGTCGAGATT TCCGGCGACA TCCAGGACGC CGTCGGCGTG CAGTGGGCGA TCAACAAGGG TGGCATGGGT GGAACCAGGA CCAGCTTCGG CAATACCGGA CTGTCCATCG GCACCCTGCT GCAGGCGCTC AAGGATGACA AGATTCCCAA CCCGCTCCCC GACGGCGCCG TCGTCGGCAT CGGCAGCAGC AGCTTCGGCG CGCTGGTCAC CGCGCTGTCG GCCAACAGCA AGAGCAACCT GTTGTCGACC CCGAGCCTGC TGACCCTGGA CAACCAGAAG GCGGAAATCC TGGTCGGCCA GAACGTCCCT TTCAATACCG GCTCCTACAC CACCAACAGC GAAGGCTCCA GCAACCCGTT CACCACCGTC GAGCGCAAGG ACATCGGCGT CAACCTCAAG GTCACCCCGC ATATCAACGA TGGCGCCGCG CTGCGTCTGG AAATCGAGCA GGAAATTTCC TCCATCGCGC CGAATGTGCA ACAGGTCAGC GACACCGATA TCATCACCAA CAAGCGCTCG ATCAAGAGCA CCATCCTCGC CGAGAACGGC CAGGTCATCG TGCTCGGCGG CCTGATCCAG GACGACGTGG TGCAGGCCGA ATCCAAGGTC CCGCTGCTTG GCGACATCCC CTGGCTGGGC AGGTTGTTCC GCTCGACCAA GGACACTCAC ACCAAGCGCA ACCTGATGGT CTTCCTGCGC CCCACCGTGG TCCTCGACGG AGCGGGCCTG GCGGCGATTT CCGGGAAAAA GTACAGCGAC ATCCGCGTGC TCGACGGACG CCGGGGTCCC GAAGGCCGCC CGAGCATCCT GCCGAGCAGC GCCGGGCAAT TGTTCGATGG GCAGACCGTG GATCTTCGCG ACCTGAAATC GGAGTGA
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Protein sequence | MSQPLFRALL APSSRSYVPA ILLSLALGIQ AAHAEDSGRN AVAPAGNQQE AHWTINLKDA DIREFIDQIS EITGETFVVD PRVKGQVSVV SKAQLSLSEV YQLFLSVMST HGFTVVAQGD QARIVPNAEA KTEAGGGQSA PDRLETRVIQ VQQSPVSELI PLIRPLVPQY GHLAAVPSAN ALIISDRSAN IARIEDVIRQ LDQKGSHDYS VINLRHGWVM DAAEVLNSAM SRGQAKGAAG AQVIADARTN RLIILGPPQA RAKLVQLAQS LDTPTARSAN TRVIRLRHND AKTLAETLGQ ISEGMKNNGG QGGEQSGGGR PSNILIRADE STNALVLLAD PDTVNALEDI VRQLDVPRAQ VLVEAAIVEI SGDIQDAVGV QWAINKGGMG GTRTSFGNTG LSIGTLLQAL KDDKIPNPLP DGAVVGIGSS SFGALVTALS ANSKSNLLST PSLLTLDNQK AEILVGQNVP FNTGSYTTNS EGSSNPFTTV ERKDIGVNLK VTPHINDGAA LRLEIEQEIS SIAPNVQQVS DTDIITNKRS IKSTILAENG QVIVLGGLIQ DDVVQAESKV PLLGDIPWLG RLFRSTKDTH TKRNLMVFLR PTVVLDGAGL AAISGKKYSD IRVLDGRRGP EGRPSILPSS AGQLFDGQTV DLRDLKSE
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