Gene PSPA7_1174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPA7_1174 
Symbol 
ID5356534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa PA7 
KingdomBacteria 
Replicon accessionNC_009656 
Strand
Start bp1173899 
End bp1175914 
Gene Length2016 bp 
Protein Length671 aa 
Translation table11 
GC content66% 
IMG OID640810227 
Productcholine transporter 
Protein accessionYP_001346559 
Protein GI152985551 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACTGACG CACAATCGCC CTCCACTACC CCCGCCACGC CCCCGCCGAT CCGCATGAAC 
CCACCGGTGT TCTACGGCGC GGCGGTCCTG ATCCTGCTGT TCGCCACGGT GGTCATAGGC
TTTCCCCAGC GCGCCGGCGA ATGGCTGCTG GCCGCGCAGA CCTGGGCCTC GCAGACCGTC
GGCTGGTACT ACCTGCTGGC GATGACCCTG TACCTGATCT TCGTGGTCGT CACCGCGCTC
TCCGGCTACG GCAAGATCAA GCTCGGCGCC GACCACGACG AACCGGAATT CAGCTACCTG
TCCTGGGCCG GCATGTTGTT CGCGGCCGGC ATCAGCATCA CCCTGTTCTT CTTCTGCGTG
TCCGAGCCGC TGACCCACTT CCTCCAACCG CCGCAAGGCG AGGCCGGTAC CCAGGAAGCC
GCGCGGCAGG CCATGGAACT GCTGTTCCTG CACTGGGGCC TGCACGGCTG GGGGGTGTTC
GCCCTGGTGG CGATGGCCCT GGCCTATTTC GCCTATCGCC ACAACCTGCC GCTGGCCCTG
CGCTCGGCGC TCTACCCGCT GATCGGCAAG CGGATCAACG GGCCGATCGG CTACACCGTG
GACTGCTTCG GCATCATCGC CACGGTGTTC GGCCTCGGCG CCGACATGGG CTTCGGCGTA
CTCCAGCTCA ACTCAGGACT GGACTACCTC TACGCCATCC CGCACACCCA CCCGGTGCAG
ATGGTGCTCA TCGCGCTGAT GATGGGCGCG GCGATCTCGG TGGCGATCTC CGGGGTCGAC
AAAGGCATCC GCATCCTCTC CGATATCAAC ATGCTGCTGG CCTGCAGCCT GCTGCTGTTC
GTGCTGTTCG CCGGGCCGAC CCAGCACCTG CTCAACACCC TGGTGCAGAA CGTCGGCGAC
TATCTCGGCC ACCTGCCGGG CAAGAGCTTC GACCTCTACG CCTACGGCGG CCCGAGCGAC
TGGCTGGGCT CGTGGACGGT GTTCTACTGG GCCTGGTGGA TCGCCTGGGC GCCCTTCGTC
GGCCTGTTCA TCGCGCGCAT CTCGCGCGGC CGGACGATCC GCGAATTCGT CTTCGGCGTG
CTGTTCATCC CGCTCGGCTT CACCCTGGCG TGGATGTCGA TCTTCGGCAA CAGCGCCCTC
GACCAGGCCC TCGGCGGCGC CAGCGAGCTC GGTCGGGTGG CCATCGAGCA ACCGTCGATG
GCGCTCTACC AGATGCTCCA GAACTATCCC TGGAGCCGCA CGGTGATCAC CGTCACGGTA
CTGGTCAGCT TCGTCTTCTT CGTCACCTCG GCGGATTCCG GGACCGTGGT CCTGTCCACC
CTCTCCGCCC ACGGCGGCAA CGCCGACGAC GACGGGCCGA AGTGGCTACG GGTGTTCTGG
GGCTCGGTCA CCGCGCTGGT CACCGGCGGG CTGCTGTTCG CCGGCAGCAT CGACGCGCTG
AAGTCGGCGG TGGTGCTGAC CTCGCTGCCC TTCTCGCTGA TCCTGCTGCT GATGATGTGG
GGCCTGCACA AGGCCTTCTA CCTGGAATCG CAGCGGCAAC GCGCGCGAAC CCACTCCCTG
GCGCCGCTGA TGAGCGGCAA CGGCAAGCGC TCCGGCGGCT GGAAGCGGCG CCTTTCGCAG
GCGGTGCACT TCCCCTCGCG GGACGAGGTG TATCGCTTCA TGAACGACGT GGTACGCCCG
GCGATCAGCG AAGTCTCCGA AGTGTTCCGC GAGAAGGGCC TGGCGGTGGA CGCCCAGCTC
GACCCGGGCA ACGCCTCGCT GAGCCTGGAG ATCGGCCATG GTGAACAGCA CCGCTTCCTC
TACCAGGTGC TGATGCGCGG CTACTTCACC CCATCCTTCG CCCGCGCCGG CATGGGCGGC
CTGCACCTGA AGAACCGCCG TTACTTCCGC GCCGAGGTGC ACCTCGCCGA GGGCAGCCAG
GACTACGACC TGATGGGCTA CACCAGGGAG CAGATCATCA ACGACATGCT CGACCAGTAC
GAGCGGCACC TGCAATTCCT TCACCTGGTG CGTTGA
 
Protein sequence
MTDAQSPSTT PATPPPIRMN PPVFYGAAVL ILLFATVVIG FPQRAGEWLL AAQTWASQTV 
GWYYLLAMTL YLIFVVVTAL SGYGKIKLGA DHDEPEFSYL SWAGMLFAAG ISITLFFFCV
SEPLTHFLQP PQGEAGTQEA ARQAMELLFL HWGLHGWGVF ALVAMALAYF AYRHNLPLAL
RSALYPLIGK RINGPIGYTV DCFGIIATVF GLGADMGFGV LQLNSGLDYL YAIPHTHPVQ
MVLIALMMGA AISVAISGVD KGIRILSDIN MLLACSLLLF VLFAGPTQHL LNTLVQNVGD
YLGHLPGKSF DLYAYGGPSD WLGSWTVFYW AWWIAWAPFV GLFIARISRG RTIREFVFGV
LFIPLGFTLA WMSIFGNSAL DQALGGASEL GRVAIEQPSM ALYQMLQNYP WSRTVITVTV
LVSFVFFVTS ADSGTVVLST LSAHGGNADD DGPKWLRVFW GSVTALVTGG LLFAGSIDAL
KSAVVLTSLP FSLILLLMMW GLHKAFYLES QRQRARTHSL APLMSGNGKR SGGWKRRLSQ
AVHFPSRDEV YRFMNDVVRP AISEVSEVFR EKGLAVDAQL DPGNASLSLE IGHGEQHRFL
YQVLMRGYFT PSFARAGMGG LHLKNRRYFR AEVHLAEGSQ DYDLMGYTRE QIINDMLDQY
ERHLQFLHLV R