Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_0830 |
Symbol | rpoB |
ID | 5357348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 820201 |
End bp | 824274 |
Gene Length | 4074 bp |
Protein Length | 1357 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640809884 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001346216 |
Protein GI | 152984487 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.435118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC GTCATGGATG TGCCGTATTT GCTGGCCATC CAGCTGGATT CCTATCGCGA ATTCCTGCAG GCTGGCGCAA CCAAGGAGCA GTTCCGCGAT ATCGGTCTGC ACGCGGCCTT CAAGTCCGTT TTCCCGATTA TCAGCTATTC CGGCAATGCT GCCCTGGAAT ACGTCGGCTA CCGTCTGGGT GAGCCGGCAT TCGATGTCAA GGAGTGCGTG CTGCGCGGCG TGACCTTCGC CGTACCGCTG CGCGTGAAAG TCCGCCTGAT CATCTTCGAC CGCGAGTCGT CGAACAAGGC GATCAAGGAC ATCAAGGAAC AAGAAGTCTA CATGGGGGAA ATCCCCCTGA TGACCGAGAA CGGTACCTTC ATCATCAACG GTACCGAGCG CGTCATCGTC TCCCAGCTGC ACCGTTCCCC GGGTGTGTTC TTCGACCACG ACCGTGGCAA GACCCACAGC TCCGGCAAGC TGCTGTACTC CGCGCGGATC ATTCCTTACC GCGGCTCCTG GCTGGACTTC GAGTTCGACC CGAAGGACTG CGTGTTCGTC CGTATCGACC GTCGCCGCAA GCTGCCGGCC TCGGTACTGC TGCGCGCGCT CGGTTACAGC ACCGAAGAGA TCCTCAACGC CTTCTACGCG ACCAACGTCT TCCACATCAA GGGCGAGACC CTGAACCTGG AGCTGGTCCC GCAGCGCCTG CGCGGTGAAG TCGCGAGCAT CGACATCAAG GACGGCAGCG GCAAGGTCAT CGTGGAGCAG GGTCGCCGTA TCACCGCCCG CCACATCAAC CAGCTGGAAA AGGCTGGCGT GACCCAGCTG GAAGTGCCGT TCGACTACCT GATCGGCCGT ACCATCGCCA AGGCGATCGT GCATCCGGCC ACCGGCGAGA TCATCGCCGA ATGCAACACC GAGCTGACCC TCGACCTCCT GGCCAAGGTG GCCAAGGCTC AGGTCGTGCG CATCGAGACG CTGTACACCA ATGACATCGA CTGCGGTCCG TTCATCTCCG ATACCCTGAA GATCGACAAC ACCAGCAATC AGCTGGAAGC CCTGGTCGAG ATCTACCGGA TGATGCGTCC GGGCGAGCCG CCGACCAAGG AAGCCGCCGA GACCCTGTTC GGCAACCTGT TCTTCAGCGC CGAGCGTTAC GACCTGTCGG CCGTGGGCCG GATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAA GGTCCGGGCG TCCTGAGCAA GGAAGACATC ATCGATGTGC TCAAGACCCT GGTCGACATC CGTAACGGCA AGGGCATCGT CGATGACATC GACCACCTGG GCAACCGCCG TGTCCGTTGC GTCGGCGAGA TGGCCGAGAA CCAGTTCCGC GTGGGCCTGG TGCGTGTCGA GCGCGCGGTC AAGGAACGCC TGTCGATGGC TGAAAGCGAA GGCCTGATGC CGCAGGACCT GATCAACGCC AAGCCGGTGG CTGCCGCGAT CAAGGAGTTC TTCGGTTCGA GCCAGCTGTC GCAGTTCATG GACCAGAACA ACCCGCTCTC CGAGATCACC CACAAGCGCC GCGTCTCCGC GCTCGGCCCG GGCGGTCTGA CCCGAGAGCG TGCGGGCTTC GAGGTTCGTG ACGTACACCC GACCCACTAC GGTCGCGTGT GCCCGATCGA AACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG GCGACCTACG CCCGCACCAA CAAGTACGGC TTCCTCGAGA GCCCGTACCG CGTGGTCAAG GACAGCCTGG TAACCGACGA GATCGTGTTC CTGTCGGCGA TCGAAGAAGC CGATCACGTC ATCGCCCAGG CTTCGGCGAC CCTCAACGAG AAGGGCCAAC TGGTGGACGA GCTGGTGGCC GTGCGTCACC TGAACGAATT CACCGTGAAG GCGCCGGAAG ACGTGACCCT GATGGACGTT TCGCCGAAGC AGGTCGTTTC CGTCGCTGCC TCGCTGATTC CGTTCCTCGA GCACGACGAC GCCAACCGCG CACTCATGGG CTCGAACATG CAGCGTCAGG CCGTGCCGAC CCTGCGTGCC GACAAGCCGC TGGTGGGCAC CGGCATGGAG CGCAACGTGG CGCGCGACTC CGGCGTCTGC GTCGTGGCTC GCCGTGGCGG GGTGATCGAC TCGGTCGATG CCAGCCGTGT CGTGGTTCGC GTGGCGGATG ACGAGGTCGA GACCGGCGAA GCGGGTGTCG ACATCTACAA CCTGACCAAG TACACCCGTT CCAACCAGAA CACTTGCATC AACCAGCGTC CGCTGGTGAG CAAGGGTGAC GTGGTCGCGC GCGGCGACAT CCTGGCCGAC GGTCCGTCCA CCGACATGGG CGAACTGGCC CTGGGCCAGA ACATGCGCGT AGCGTTCATG CCCTGGAACG GCTTCAACTT CGAAGACTCC ATCTGCCTGT CCGAGCGTGT GGTCCAGGAA GATCGCTTCA CCACGATCCA CATCCAGGAG CTGACCTGCG TCGCTCGCGA CACCAAGCTC GGCCCAGAGG AAATCACCGC GGACATCCCG AACGTGGGCG AGGCTGCGCT GAACAAGCTG GACGAGGCCG GTATCGTCTA CGTCGGCGCC GAAGTGCAGG CCGGCGACAT CCTGGTCGGC AAGGTCACTC CGAAAGGCGA GACCCAGCTG ACTCCTGAAG AGAAGCTGCT GCGCGCGATC TTCGGTGAGA AGGCGTCCGA CGTGAAGGAT ACTTCCCTGC GTGTGCCGAC CGGCACCAAG GGCACCGTGA TCGACGTACA GGTCTTCACC CGCGATGGCG TCGAGCGCGA TTCCCGCGCG CTGTCCATCG AGAAGATGCA GCTCGACCAG ATCCGCAAGG ACCTGAACGA AGAGTTCCGC ATCGTCGAAG GCGCGACCTT CGAGCGTCTG CGTGCCGCCC TGGTCGGTGC CAAGGCCGAA GGCGGCCCGG CGCTGAAGAA GGGCACGGAG ATCACCGACG ACTACCTGGA CGGCCTCGAG CGCGGCCAGT GGTTCAAGCT GCGCATGGCC GACGATGCCC TTAACGAGCA GCTGGAGAAG GCCCAGGCCT ACATCAGCGA TCGTCGTCAG CTCCTGGACG ACAAGTTCGA GGACAAGAAG CGCAAGCTGC AGCAGGGCGA CGACCTGGCT CCGGGCGTGC TGAAGATCGT CAAGGTCTAC CTGGCGATCA AGCGTCGCAT CCAGCCGGGC GACAAGATGG CCGGCCGTCA CGGTAACAAG GGTGTGGTCT CGGTGATCAT GCCGGTGGAA GACATGCCGC ACGATGCCAA CGGCACCCCG GTCGACATCG TCCTCAACCC GCTGGGCGTA CCGTCGCGTA TGAACGTCGG CCAGATCCTC GAAACCCACC TGGGCCTCGC GGCCAAGGGG CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGCA AGGTCGCCGA GCTGCGCAAG TTCCTGCACG AGATCTACAA CGAGATCGGC GGTCGCGAGG AAAACCTCGA CGAGCTGGGC GACAACGAGA TCCTCGCGCT GGCCAAGAAC CTGCGCGGTG GCGTACCGAT GGCGACCCCG GTGTTCGATG GCGCCAAGGA ACGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCG GAAAGCGGCC AGATGCGTCT GTTCGACGGT CGTACCGGCA ACCAGTTCGA GCGTCCGACC ACCGTCGGCT ACATGTACAT GCTCAAGCTG AACCACCTGG TGGACGACAA GATGCACGCC CGTTCCACCG GCTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC GGTGGTCAGC GCTTCGGTGA GATGGAGGTG TGGGCGCTGG AAGCCTATGG CGCGGCGTAC ACCCTGCAAG AAATGCTGAC GGTCAAGTCG GACGACGTGA ACGGCCGGAC CAAGATGTAC AAGAACATCG TGGACGGCGA TCACCGCATG GAGGCCGGCA TGCCCGAGTC CTTCAACGTT CTGATCAAAG AGATTCGTTC GCTCGGCATC GACATCGAAC TGGAAACCGA ATAA
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Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKEQFRD IGLHAAFKSV FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD RESSNKAIKD IKEQEVYMGE IPLMTENGTF IINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEILNAFYA TNVFHIKGET LNLELVPQRL RGEVASIDIK DGSGKVIVEQ GRRITARHIN QLEKAGVTQL EVPFDYLIGR TIAKAIVHPA TGEIIAECNT ELTLDLLAKV AKAQVVRIET LYTNDIDCGP FISDTLKIDN TSNQLEALVE IYRMMRPGEP PTKEAAETLF GNLFFSAERY DLSAVGRMKF NRRIGRTEIE GPGVLSKEDI IDVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV KERLSMAESE GLMPQDLINA KPVAAAIKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ATYARTNKYG FLESPYRVVK DSLVTDEIVF LSAIEEADHV IAQASATLNE KGQLVDELVA VRHLNEFTVK APEDVTLMDV SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC VVARRGGVID SVDASRVVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD VVARGDILAD GPSTDMGELA LGQNMRVAFM PWNGFNFEDS ICLSERVVQE DRFTTIHIQE LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVQAGDILVG KVTPKGETQL TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LSIEKMQLDQ IRKDLNEEFR IVEGATFERL RAALVGAKAE GGPALKKGTE ITDDYLDGLE RGQWFKLRMA DDALNEQLEK AQAYISDRRQ LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIKRRIQPG DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG LGEKINRMLE EQRKVAELRK FLHEIYNEIG GREENLDELG DNEILALAKN LRGGVPMATP VFDGAKEREI KAMLKLADLP ESGQMRLFDG RTGNQFERPT TVGYMYMLKL NHLVDDKMHA RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY KNIVDGDHRM EAGMPESFNV LIKEIRSLGI DIELETE
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