Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_0718 |
Symbol | rpoD |
ID | 5357614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 721805 |
End bp | 723658 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640809772 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001346113 |
Protein GI | 152984199 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCGGAA AAGCGCAACA GCAATCTCGT CTGAAAGAGT TGATCGCCCG CGGTCGTGAG CAGGGTTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CGGAGGATAT TTCCGATCCG GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGACA GCCCCGGATG CGGATGCCCT GCTGCTGGCC GAGGCGGATA CCGACGAAGC CGCAGCGGAA GAAGCCGCAG CGGCCCTGGC CGCGGTGGAA AGCGACATCG GTCGCACCAC CGACCCGGTG CGCATGTACA TGCGCGAAAT GGGTACCGTG GAACTGCTGA CCCGCGAAGG CGAGATCGAA ATCGCCAAGC GCATCGAGGA AGGCATCCGC GAAGTGATGA GCGCCATCGC CCAGTTCCCG GGCACGGTGG ACAGCATCCT GGCCGACTAC AACCGCATCG TCGCCGAGGG CGGACGCCTG TCCGACGTCC TCAGCGGCTA CATCGATCCC GATGATGGCA GCCTGCCCGC CGAAGAGGTG GAGCCGGTCA ACCTGAAGGA CGATTCCGCC GACTCGAAAG AGAAGGACGA TGAGGAAGAG GAAAGCGACG ACAACAGCGA TAGCGACGAC GAAGGTGACG GCGGTCCGGA CCCGGAAGAA GCCCGCCTGC GTTTCACCGC CGTTTCCGAA CAGCTCGACA AGGCCAAGAA GGCCCTGAAG AAGCACGGTC GCGGCAGCAA GCAGGCCACC GCCGAGCTGA CCGGCCTGGC CGAGCTGTTC ATGCCGATCA AGCTGGTGCC CAAGCAGTTC GACGCCCTGG TCGCCCGCGT GCGCTCCGCC CTGGAAGGCG TTCGCGCCCA GGAACGCGCC ATCATGCAGC TCTGCGTGCG TGACGCGCGC ATGCCGCGAG CCGACTTCCT GCGCCTGTTC CCGAACCACG AGACCGACGA GAAGTGGGTC GACAGCGTTC TGAAGAGCAA GCCGAAGTAC GCCGAGGCCA TCGAGCGCCT GCGCGACGAC ATCCTGCGCA ACCAGCAGAA GCTGGCGGCC CTGGAAAGCG AAGTCGAGCT GACCGTCGCC GAGATCAAGG AAATCAACCG CGCGATGTCG ATCGGCGAAG CCAAGGCTCG CCGGGCGAAG AAGGAAATGG TCGAGGCCAA CCTGCGCCTG GTCATCTCCA TCGCCAAGAA GTACACCAAC CGCGGCCTGC AGTTCCTCGA CCTGATCCAG GAAGGCAACA TCGGCCTGAT GAAGGCGGTG GACAAGTTCG AATACCGTCG CGGCTACAAG TTCTCCACCT ACGCCACCTG GTGGATCCGC CAGGCGATCA CCCGTTCGAT CGCCGACCAG GCACGCACCA TCCGCATCCC GGTGCACATG ATCGAGACGA TCAACAAGCT CAACCGCATC TCCCGCCAGA TGCTTCAGGA AATGGGCCGC GAGCCCACCC CGGAAGAGCT TGGCGAGCGC ATGGACATGC CTGAGGACAA GATCCGCAAG GTACTGAAGA TCGCCAAGGA GCCGATCTCC ATGGAAACCC CGATCGGTGA CGACGAAGAC TCGCACCTGG GCGATTTCAT CGAGGACTCC ACCATGCAGT CGCCGATCGA GATGGCGACC AGCGAGAGCC TCAAGGAATC CACCCGCGAA GTGCTCGCCG GCCTCACCGC CCGGGAAGCC AAGGTGCTGC GCATGCGCTT CGGCATCGAC ATGAACACCG ACCATACCCT CGAGGAAGTC GGCAAGCAGT TCGATGTGAC CCGCGAGCGG ATCCGCCAGA TCGAAGCCAA GGCGCTGCGC AAGCTGCGCC ACCCCTCGCG AAGCGAGCAC CTGCGCTCCT TCCTCGACGA GTGA
|
Protein sequence | MSGKAQQQSR LKELIARGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFET APDADALLLA EADTDEAAAE EAAAALAAVE SDIGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEEGIR EVMSAIAQFP GTVDSILADY NRIVAEGGRL SDVLSGYIDP DDGSLPAEEV EPVNLKDDSA DSKEKDDEEE ESDDNSDSDD EGDGGPDPEE ARLRFTAVSE QLDKAKKALK KHGRGSKQAT AELTGLAELF MPIKLVPKQF DALVARVRSA LEGVRAQERA IMQLCVRDAR MPRADFLRLF PNHETDEKWV DSVLKSKPKY AEAIERLRDD ILRNQQKLAA LESEVELTVA EIKEINRAMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR EPTPEELGER MDMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDS TMQSPIEMAT SESLKESTRE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR KLRHPSRSEH LRSFLDE
|
| |