| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5374 |
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| Symbol | |
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| ID | 1042082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 6125196 |
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| End bp | 6126899 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637148773 |
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| Product | choline/carnitine/betaine transporter family protein |
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| Protein accession | NP_747475 |
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| Protein GI | 26992050 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.985383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.22306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGCCG AATCTGGCCT GCTCAAAGGC CTCAATCCCA CCGTGACGAT CTGGTCGTTA
CTGGCCGTAG TAGCCTTTGT GCTGTTTTGC GCCCTGTTTG CCGAACATGC AGCAGCGGTT
TTTCAACGTG CATCTGACTT CATCCTGCAG AATTTCAAAT GGTTCTACCT GATTTCCGTC
ACGGGTGTGC TGGGGCTACT GATCTATCTG ATGTGCAGCA AGTTTGGGTC TATGAAGCTT
GGGCGAGACG ACGACAAACC CGAGTTCAGC TTCGGCTCCT GGATCGCCAT GTTGTTCAGT
GGCGGCATGG GCATCGGACT GATCTTCTGG TCGGTTGCCG AACCCATGTG GCATTACGCG
GGCAACCCGT TCGCCACCGG CCTCACCGAC GAAGCCGCCA CCACAGCTAT GCGAATTACC
CTATTCCACT GGGGCCTGCA TCCCTGGGCT ATTTTTACCA TCGTTGGCCT GGGCCTTGCC
TACTTTGCCT ATCGCAAGGG CTTGCCGCTG AGCATGCGCT CGATCCTTTA CCCGCTGATT
GGTGAGCGCA TCTATGGGCC CATCGGACAT GTGGTGGACA TCCTTGCCGT GGTGATTACC
GCGTTCGGTG TATCCCAGTC GCTGGGCCTG GGCGTGGTGC AAATGAACAC CGGGCTGAGC
CAGGTGTTTG ACCTGCCCAT CAGCCTGGGG GTGCAGATCA CCTTGATCGT GCTCATTACC
CTCGTTACTA CCGTATCGGT GATGGCCGGC GTGTCGCGTG GCATGAAGCG CCTTTCGGAA
TGGAATATGC TGTTGTCGGT GGTGCTGGTG GTGTTGATCC TGCTGCTGGG GCCAACCCGC
TACATCATCA ACCTGATGTT GGAGAGCACC GGCGACTACG CCAGCCATGT AGTGGGTCTG
AGCTTTTGGA GCGATACCCA GAAGGACAGC GGCTGGCAGA ACTGGTGGAC GGCGTTCTAC
TGGCCGTGGT GGATGACCTG GGGCCCGTTT GTCGGTCTGT TCATTGCGCG AATTTCCAAA
GGCCGCAGCA TCCGTGAACT GATCGCCGGC GCGCTGTTGG TACCCACCCT GGTGACGATC
ATCTGGATGT CGGTGTTCGG TGGTACCGCG CTCAAGGCTG AGCAGCTCGA TCGTCAGCAG
CACGCAGAAC TGGTTGCCAG TGGTGAGCTG CAGGGCGACA AGGCCAAGTA CGAAGGTGGC
ACGGTATTGC TGGCGACCAA GCAGGAAACC ACCGCTGCCA TGTTCACCCT GCTGCACAAG
ATCGACGCCG GTACGTTGGG CAAGGTGCTG AGCGTGCTGG TCTGTATCCT GCTGGCGACG
TACTTCATCA CCTCGGCCGA CTCCGGCACC CAGGTGCTGT GTACGTTGAA CTCCATGGGC
AGCGCCAACC CGCCGCAGAG TATCCGCCTG CTCTGGTGCA TCCTGGAAGG TGCTATAGCC
ATGGCTCTGC TGATGGCGGG GGGGCTCAAG GCGATCCAGA TGGCGAGCAT TGCGGCGGGA
TTGCCGATTG CGGGGTTCAT CCTGCTGATT AGTTACACCC TGATGCGCAG CTTGCGCCAG
GAGATGGCTG ACGGCCTGCT TGATACGCCG CCGGGTGGGC GCCTTCCTAT ACCTGGGATT
CACCCGCAAG GCATCACGCC GGTGGCTGGG CCCTTGGCCT GCGAGGGGCT TGATATGGGG
CTGACAGCGA AGAAAGCCAG CTAA
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| Protein sequence | MRAESGLLKG LNPTVTIWSL LAVVAFVLFC ALFAEHAAAV FQRASDFILQ NFKWFYLISV
TGVLGLLIYL MCSKFGSMKL GRDDDKPEFS FGSWIAMLFS GGMGIGLIFW SVAEPMWHYA
GNPFATGLTD EAATTAMRIT LFHWGLHPWA IFTIVGLGLA YFAYRKGLPL SMRSILYPLI
GERIYGPIGH VVDILAVVIT AFGVSQSLGL GVVQMNTGLS QVFDLPISLG VQITLIVLIT
LVTTVSVMAG VSRGMKRLSE WNMLLSVVLV VLILLLGPTR YIINLMLEST GDYASHVVGL
SFWSDTQKDS GWQNWWTAFY WPWWMTWGPF VGLFIARISK GRSIRELIAG ALLVPTLVTI
IWMSVFGGTA LKAEQLDRQQ HAELVASGEL QGDKAKYEGG TVLLATKQET TAAMFTLLHK
IDAGTLGKVL SVLVCILLAT YFITSADSGT QVLCTLNSMG SANPPQSIRL LWCILEGAIA
MALLMAGGLK AIQMASIAAG LPIAGFILLI SYTLMRSLRQ EMADGLLDTP PGGRLPIPGI
HPQGITPVAG PLACEGLDMG LTAKKAS
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