Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5341 |
Symbol | |
ID | 1042137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 6088812 |
End bp | 6089915 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637148740 |
Product | ABC transporter, periplasmic polyamine-binding protein, putative |
Protein accession | NP_747442 |
Protein GI | 26992017 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.169562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000795436 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTCCGAC TCAAACGTCT GCTCGCCCCG TTCATCGCTG CCACCCTGTT CGCAGGCGCC CTGCATGCAC AAGCCGAGCA GCGCACCCTG CGTGTATATA ACTGGTTCGA TTACATCACC CCACAGACCT TGACTGCCTT CCAGAAGGAC AGCGGCGTGA AGCTGGTGTA CGACATCTTC GACACCAACG AGGCGCTGGA AGCCAAGCTG CTGACCGGCA ACTCCGGCTA TGACGTGGTA GTACCGTCCA ACGTGTTCCT CGCCAAGCAG ATCGAAGCCG GGGTGTTCCA GCCGCTGGAT CGCAGCAAGC TGCCGAACTG GCAACACCTG GACCCGGCAC TGATGAAGCT GATCGAAGCT AACGACCCGG GCAACAAGTT TGCCGTGCCG TATATGTACG GCACCGTGCT GATCGGCTTC AACCCGGCCA AGGTCAAGGC TGCACTCGGC GACAACGCGC CGGTGGACAG CTGGGACCTG ATCTTCAAGG AAGAGAACAT CGCCAAGCTC AAGCAGTGCG GCGTGGCCCT GCTCGACTCG CCGTCGGAGA TTCTACCGCT GGCGCTGCAG TACCTGGGCT TGCCGCCGAA CAGCGACAAA CCGGCGGACT ACAAGAAGGC CGAGGAACTG ATGCTGAAGA TTCGTCCGCA TATCACCTAC TTCCACTCCT CGAAGTACAT GGCAGACATC GCCAATGGCG ACATCTGTGT GGCAGTGGGC TACAGCGGCA GCTTCTCGCA GGCAGCCAAC CGCGCCCGTG AGGCGAACAA CGGCGTGGTG GTGGACATGC GCCTGCCCAA GGAAGGCGCG CCGATCTGGT TCGACATGCT GGCGATTCCA AAGGGCGCTG CGAACCCGGA GGATGCGCAT ACGTTCATCA ATTACCTGCT GCGGCCAGAG GTGATTGCGC CGATCAGCGA CTTCGTGGGG TATCCGAACC CGAACAAGGA TGCGACCGAC AAGGTGAATC CGACGATTCG CAACAACCCC AACCTGTATC CGACGGCAGA GGCGATGGCC AAGCTGTATA CCCTCAAGCC TTTGACGCGA AATGCCGAAC GGGCCAGGAC CCGCGCCTGG ACGCGGATAA AGTCCGGTAC GTGA
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Protein sequence | MVRLKRLLAP FIAATLFAGA LHAQAEQRTL RVYNWFDYIT PQTLTAFQKD SGVKLVYDIF DTNEALEAKL LTGNSGYDVV VPSNVFLAKQ IEAGVFQPLD RSKLPNWQHL DPALMKLIEA NDPGNKFAVP YMYGTVLIGF NPAKVKAALG DNAPVDSWDL IFKEENIAKL KQCGVALLDS PSEILPLALQ YLGLPPNSDK PADYKKAEEL MLKIRPHITY FHSSKYMADI ANGDICVAVG YSGSFSQAAN RAREANNGVV VDMRLPKEGA PIWFDMLAIP KGAANPEDAH TFINYLLRPE VIAPISDFVG YPNPNKDATD KVNPTIRNNP NLYPTAEAMA KLYTLKPLTR NAERARTRAW TRIKSGT
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