Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5273 |
Symbol | |
ID | 1042289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 6021784 |
End bp | 6023076 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637148672 |
Product | oxidoreductase, putative |
Protein accession | NP_747374 |
Protein GI | 26991949 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.194713 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCCACA GCGCGCAGCA CGCCGCCTCC TATTACGCCG CCAGCAGCGC GCCACACCCC GACCACGCCT ACCTGCAAGG CGAACACAAC GCCGACGTGT GCATCATCGG CGGCGGCTAC TCGGGCCTGA ACACCGCCAT CGAGCTGGCC GAGCGTGGTT TCTCGGTCAT CCTGCTGGAA GCGCGCAAAC TTGGCTGGGG CGCCAGTGGG CGCAATGGCG GGCAACTGAT CCGAGGGGTC GGTCATGGTC TGGAGCAGTT CCTCCCGGTC ATCGGAGAAG AAGGCGTGCG CACCATGAAA CTGATGGGCC TGGAGGCCGT ACAGATCGTG CGCGAGCGGG TAGAAAAGCA TGCTATCGCC TGCGACCTGG CCTGGGGCTA CTGCGACCTG GCCAACAAAC CCGCCGAGCT GCTGGGCTTT GCCCAAGACG CCGAGGAGCT GCGCGGTCTG GGCTATGCAC ATGAGCTGCG GCTGGTCGGC AAGGACGATA TCCACAGCGT GGTGGGTGCC GACTGCTATG TGGGGGGGCT GGTCGACATG GGCTCCGGGC ATCTGCATCC GCTCAATCTG GCATTGGGTG AAGCCGCCGC AGCCGCCCGC CTGGGCGTGA AGTTGTTCGA GCAATCCGAA GTCACCCGCA TCGACTACGG CACTGAAGTG CAGGTGCATA CTGCCCAAGG CCGGGTACGC GCCAAGACCC TGGTACTGTG CTGCAACGCC TACCACAACG ACCTCAATCG CGAGCTGGGC GGCAAGGTGC TGCCGGCCGG CAGCTACATC ATCGCCACCG AGCCGCTGGG CGAAGAACGC GCACGCACAT TGCTGCCGCA GAATATGGCG GTGTGTGACC AGCGCGTGGC GCTGGACTAC TACCGCCTGT CCGCCGACCA CCGCCTGCTG TTTGGCGGTG CCTGCCACTA TTCAGGCCGC GACCCGAAGG ACATCGCCGC CTACATGCGG CCGAAGATGC TCAAGGTGTT CCCGCAGCTT GCCGACGTGC GCATCGACTA CCAGTGGGGT GGCATGATCG GCATTGGTGC CAATCGCCTG CCGCAGGTTG GCCGCCTGGC CAGCCAGCCG AACGTGTATT ACGCCCAGGC CTACTCGGGC CATGGGCTCA ACGCCACCCA CCTGGCCGCG CGCCTGCTGG GTGAAGCCAT CAGTGGCCAG GAAAGCGGGC GCTTCGACCT TTTCAACAAG GTGCCGCACA TCACCTTCCC TGGCGGCAAG CACCTGCGCT CGCCACTGCT GGCGCTGGGA ATGCTGTGGC ATCGCCTCAA AGAGCTGACT TGA
|
Protein sequence | MIHSAQHAAS YYAASSAPHP DHAYLQGEHN ADVCIIGGGY SGLNTAIELA ERGFSVILLE ARKLGWGASG RNGGQLIRGV GHGLEQFLPV IGEEGVRTMK LMGLEAVQIV RERVEKHAIA CDLAWGYCDL ANKPAELLGF AQDAEELRGL GYAHELRLVG KDDIHSVVGA DCYVGGLVDM GSGHLHPLNL ALGEAAAAAR LGVKLFEQSE VTRIDYGTEV QVHTAQGRVR AKTLVLCCNA YHNDLNRELG GKVLPAGSYI IATEPLGEER ARTLLPQNMA VCDQRVALDY YRLSADHRLL FGGACHYSGR DPKDIAAYMR PKMLKVFPQL ADVRIDYQWG GMIGIGANRL PQVGRLASQP NVYYAQAYSG HGLNATHLAA RLLGEAISGQ ESGRFDLFNK VPHITFPGGK HLRSPLLALG MLWHRLKELT
|
| |